Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LG542_RS07735 Genome accession   NZ_CP045007
Coordinates   1572991..1574799 (+) Length   602 a.a.
NCBI ID   WP_057907402.1    Uniprot ID   -
Organism   Latilactobacillus graminis strain LG542     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567991..1579799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG542_RS07725 (LG542_07730) - 1570130..1571368 (-) 1239 WP_192937875.1 NupC/NupG family nucleoside CNT transporter -
  LG542_RS07730 (LG542_07735) - 1571591..1572793 (-) 1203 WP_057907403.1 LCP family protein -
  LG542_RS07735 (LG542_07740) pepF 1572991..1574799 (+) 1809 WP_057907402.1 oligoendopeptidase F Regulator
  LG542_RS07740 (LG542_07745) - 1575208..1575984 (-) 777 WP_057907508.1 metal ABC transporter permease -
  LG542_RS07745 (LG542_07750) - 1576019..1576699 (-) 681 WP_057907401.1 metal ABC transporter ATP-binding protein -
  LG542_RS07750 (LG542_07755) - 1576696..1577583 (-) 888 WP_057907400.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LG542_RS07755 (LG542_07760) - 1577743..1578324 (-) 582 WP_057907399.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67400.92 Da        Isoelectric Point: 5.5387

>NTDB_id=391215 LG542_RS07735 WP_057907402.1 1572991..1574799(+) (pepF) [Latilactobacillus graminis strain LG542]
MSIQQLPSRDKLSESLTWDLTTIFKNDAAFEAAYQSVQAQLPMLEKPDQPFTTASQLLMTIKQTLAIFRQLETVYVYASM
KNDQDTTNATYQGYQAKVDALAAEVSAAAAFLEPAILAIPVAQLTDWLTKTPDLADYSHFIRTITDSRAHVLSGHEEALL
AAAGDIFGAASQTFSVLDNSDLQFPDVTDETGQTLQLSDGVYSQLLQSTDRTVRQQAFTALYTTYDQFKNTFATTLATEI
KGHNYLAQVHHYNSARQAALAPKAIPESVYTTLVDQVNQHLPLLHRYTELRKKQLKLSELHMFDLYTPLLGKPALTYTYE
QAQATAKKALAILGPDYAQQVTHIFNNRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAL
TRQNQKYVYGDYPIFVAEIASTTNENLLTEYLLQTQTDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHEAAADGQPL
TAAFMSKQYAAINARYYGPAVVNDSQIALEWARIPHFYMNYYVYQYATGFAAATTLAKGITMKQPGALTHYLDYLKAGSS
AYPIDIMQQAGVDMTSAAYLKRAFTVFEERLNQLETLLTKLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=391215 LG542_RS07735 WP_057907402.1 1572991..1574799(+) (pepF) [Latilactobacillus graminis strain LG542]
ATGTCAATTCAACAATTACCCTCACGTGATAAACTTTCAGAAAGCCTAACTTGGGACTTAACGACAATTTTCAAAAACGA
TGCTGCTTTTGAAGCTGCCTACCAGAGTGTGCAGGCCCAATTACCCATGTTAGAGAAACCTGATCAGCCATTTACAACAG
CTAGCCAGCTGCTCATGACCATTAAACAAACCTTAGCCATTTTTCGCCAGCTTGAAACGGTCTACGTTTATGCCAGTATG
AAAAATGACCAAGATACTACCAACGCAACCTATCAAGGATACCAGGCAAAAGTAGATGCACTGGCGGCAGAAGTTTCAGC
CGCTGCTGCTTTTTTAGAACCCGCCATCCTTGCCATCCCTGTTGCACAATTAACTGACTGGCTTACTAAAACACCTGATC
TAGCTGATTACAGCCATTTCATTCGAACTATTACAGATAGCCGGGCCCACGTGCTATCTGGCCATGAAGAAGCACTACTG
GCCGCTGCTGGCGATATTTTCGGGGCGGCAAGTCAAACCTTCAGCGTCTTGGATAACTCTGACTTACAATTCCCAGATGT
AACTGATGAAACGGGTCAAACATTACAATTATCAGACGGCGTTTACAGTCAGCTCCTACAATCAACAGATCGAACAGTCC
GTCAACAAGCTTTCACGGCGTTATACACCACCTATGACCAATTCAAAAATACATTTGCCACAACCCTCGCCACTGAAATT
AAAGGACACAATTACTTGGCCCAAGTTCATCATTACAATAGTGCCCGCCAAGCAGCACTAGCACCTAAAGCAATTCCAGA
ATCCGTCTATACAACCTTGGTCGATCAAGTAAATCAACATTTACCGCTCTTACATCGCTATACTGAACTCCGCAAAAAAC
AACTTAAATTATCGGAACTACACATGTTTGACCTTTACACACCTCTTTTAGGAAAACCGGCGCTCACCTACACCTATGAA
CAAGCACAAGCAACCGCTAAAAAAGCGCTCGCCATTTTAGGACCGGACTACGCCCAACAAGTCACACACATTTTCAACAA
TCGCTTAATCGACGTCTGCGAAAATCAAGGCAAGCGTAGTGGCGCTTATTCTGGCGGTGCTTATGATACAAATCCATTTA
TTTTATTAAATTGGCAAGATGATTTAAATAACTTGTACACATTGGTTCACGAGACTGGCCACAGTGTCCACAGTGCTTTA
ACGCGTCAAAATCAAAAATACGTCTACGGTGACTACCCCATTTTCGTAGCTGAAATTGCCTCAACGACCAACGAAAATTT
ATTAACCGAGTATTTATTGCAAACGCAAACCGACCCTAAAGTTCAAGCCTATTTACTGAACTACTACTTGGACGGTTTTA
AAGGAACTGTTTTCCGCCAAACCCAATTTGCTGAATTCGAACACGCAATGCACGAAGCAGCCGCCGATGGTCAGCCACTA
ACGGCCGCCTTCATGTCCAAACAATACGCGGCCATTAACGCTCGTTATTATGGTCCGGCCGTTGTTAACGATTCACAGAT
TGCGCTTGAATGGGCCCGTATTCCACATTTTTACATGAACTATTATGTTTACCAATATGCAACGGGCTTTGCAGCCGCAA
CCACATTGGCTAAAGGTATCACAATGAAACAACCGGGCGCTCTTACCCATTACTTGGACTATTTAAAAGCTGGTAGCTCT
GCGTATCCCATCGACATCATGCAACAAGCTGGCGTTGATATGACTAGTGCCGCCTACCTCAAACGGGCCTTTACCGTTTT
CGAAGAACGCCTTAATCAGCTCGAAACACTACTAACAAAACTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-584)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.545

98.671

0.538

Multiple sequence alignment