Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LG542_RS07565 Genome accession   NZ_CP045007
Coordinates   1528954..1530318 (-) Length   454 a.a.
NCBI ID   WP_057907434.1    Uniprot ID   -
Organism   Latilactobacillus graminis strain LG542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1523954..1535318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG542_RS07540 (LG542_07545) - 1524233..1524766 (-) 534 WP_057907438.1 NYN domain-containing protein -
  LG542_RS07545 (LG542_07550) rlmB 1524770..1525549 (-) 780 WP_057907511.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LG542_RS07550 (LG542_07555) - 1525632..1526039 (-) 408 WP_057907437.1 Mini-ribonuclease 3 -
  LG542_RS07555 (LG542_07560) cysS 1526036..1527442 (-) 1407 WP_057907436.1 cysteine--tRNA ligase -
  LG542_RS07560 (LG542_07565) - 1527811..1528923 (-) 1113 WP_057907435.1 PIN/TRAM domain-containing protein -
  LG542_RS07565 (LG542_07570) radA 1528954..1530318 (-) 1365 WP_057907434.1 DNA repair protein RadA Machinery gene
  LG542_RS07570 (LG542_07575) - 1530397..1530936 (-) 540 WP_057907433.1 dUTP diphosphatase -
  LG542_RS07575 (LG542_07580) rpiA 1531118..1531801 (+) 684 WP_057907432.1 ribose-5-phosphate isomerase RpiA -
  LG542_RS07580 (LG542_07585) - 1531994..1533316 (+) 1323 WP_057907431.1 aminopeptidase C -
  LG542_RS07585 (LG542_07590) - 1533618..1534964 (+) 1347 WP_057907430.1 C1 family peptidase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49806.28 Da        Isoelectric Point: 7.3494

>NTDB_id=391214 LG542_RS07565 WP_057907434.1 1528954..1530318(-) (radA) [Latilactobacillus graminis strain LG542]
MAKIKTQFVCQNCGYSSPRFLGRCPNCGAWNQMVEEREQPAASAKSNFTISGRATEPEQISTVNIQKEPRIKTELNELNR
VLGGGVVPGSLILIGGDPGIGKSTLLLQVSGQLEKVGKILYVSGEESASQIKMRANRLNVNGDQLYLYPETDMGNIRHQI
EVMKPDFVVIDSIQTMSEPEVTSAVGSVSQVRQVTAELMRIAKTNQITIFVVGHVTKEGAIAGPKILEHMVDTVLYFEGD
THHTYRILRSVKNRFGSTNEIGIFEMREAGLKEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVELQTLITPTLFGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLANQDAYLKATGGVKLDEPAIDLAMAVSIASSYRDKEIPQTDCFVGEIGLTGEI
RRVNRIEQRVSEAAKLGFKRIYIPKNNLQGWEAPTDIQVIGMTTIAETLKKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=391214 LG542_RS07565 WP_057907434.1 1528954..1530318(-) (radA) [Latilactobacillus graminis strain LG542]
GTGGCTAAAATTAAGACTCAATTTGTTTGCCAAAATTGTGGCTATAGCTCCCCTAGATTCTTAGGGCGATGTCCCAATTG
CGGTGCTTGGAACCAAATGGTCGAAGAACGGGAACAACCTGCAGCTAGTGCGAAATCCAATTTCACGATTTCGGGGCGCG
CAACAGAACCAGAACAAATTAGTACCGTTAATATTCAAAAAGAGCCACGGATTAAAACGGAATTAAACGAACTCAACCGC
GTGCTTGGCGGTGGAGTAGTGCCAGGCTCCTTGATTCTAATTGGTGGGGACCCTGGGATTGGAAAGTCAACATTGCTTCT
GCAAGTTTCCGGACAACTCGAAAAGGTTGGCAAGATTCTCTATGTTTCTGGTGAAGAAAGTGCTTCACAGATTAAGATGC
GAGCTAACCGACTGAACGTCAATGGTGATCAACTCTATTTATATCCGGAAACCGACATGGGGAATATTCGGCATCAGATT
GAAGTTATGAAACCAGATTTCGTGGTAATTGACTCGATTCAAACGATGAGTGAACCAGAAGTGACATCCGCAGTTGGTAG
CGTTTCCCAAGTGCGACAGGTAACTGCCGAATTGATGCGGATTGCCAAGACAAATCAAATTACGATTTTTGTTGTTGGGC
ATGTGACAAAGGAAGGGGCCATCGCAGGTCCCAAAATTTTAGAACATATGGTAGACACCGTGTTGTATTTTGAAGGCGAC
ACGCATCATACCTACCGTATTTTACGGTCAGTGAAAAATCGGTTTGGTTCAACAAATGAAATTGGAATTTTCGAAATGCG
GGAAGCTGGGTTGAAGGAAGTCGCAAATCCATCCGAAATTTTTCTCGAAGAACGATTAGCAGGTGCGACTGGTTCAGCGG
TGGTGGTTTCAATGGAAGGAACGCGACCGATTTTGGTCGAGTTACAAACACTGATTACTCCGACGTTATTTGGAAATGCG
AAGCGGACATCTTCTGGTCTCGATCATAATCGGGTGTCATTGATTATGGCGGTGCTCGAAAAACGAGCGAATCTGATGTT
AGCGAATCAAGATGCTTATTTAAAAGCAACTGGAGGCGTTAAATTAGATGAGCCAGCAATTGATTTGGCAATGGCAGTCT
CGATTGCATCGAGTTATCGGGATAAAGAAATTCCCCAGACAGATTGTTTTGTTGGCGAAATTGGTTTGACGGGTGAAATC
CGGCGAGTTAACCGAATTGAACAACGGGTGAGTGAAGCTGCAAAACTTGGCTTTAAACGAATTTATATTCCCAAGAATAA
CTTACAAGGTTGGGAGGCACCAACTGATATTCAAGTGATTGGTATGACCACGATTGCAGAAACTTTAAAAAAAGTATTCA
ACTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.653

99.78

0.685
  radA Streptococcus pneumoniae Rx1

68.653

99.78

0.685
  radA Streptococcus pneumoniae D39

68.653

99.78

0.685
  radA Streptococcus pneumoniae R6

68.653

99.78

0.685
  radA Streptococcus pneumoniae TIGR4

68.653

99.78

0.685
  radA Streptococcus mitis SK321

68.653

99.78

0.685
  radA Bacillus subtilis subsp. subtilis str. 168

65.121

99.78

0.65

Multiple sequence alignment