Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   C528_RS05640 Genome accession   NZ_CP053256
Coordinates   1208377..1209612 (+) Length   411 a.a.
NCBI ID   WP_001917627.1    Uniprot ID   -
Organism   Helicobacter pylori A45     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1203377..1214612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C528_RS05620 (C528_005590) - 1203792..1205726 (+) 1935 WP_025449283.1 type IA DNA topoisomerase -
  C528_RS08185 - 1205726..1205854 (+) 129 WP_001917631.1 hypothetical protein -
  C528_RS05625 (C528_005595) - 1205856..1206842 (+) 987 WP_001917630.1 VirB8/TrbF family protein -
  C528_RS05630 (C528_005600) - 1206842..1207039 (+) 198 WP_001917629.1 hypothetical protein -
  C528_RS05635 (C528_005605) - 1207043..1208380 (+) 1338 WP_001917628.1 TrbG/VirB9 family P-type conjugative transfer protein -
  C528_RS05640 (C528_005610) comB10 1208377..1209612 (+) 1236 WP_001917627.1 DNA type IV secretion system protein ComB10 Machinery gene
  C528_RS05645 (C528_005615) - 1209682..1209975 (+) 294 WP_001917626.1 hypothetical protein -
  C528_RS05650 (C528_005620) - 1209968..1210231 (+) 264 WP_001917625.1 hypothetical protein -
  C528_RS05655 (C528_005625) - 1210228..1210527 (+) 300 WP_000660136.1 hypothetical protein -
  C528_RS05660 (C528_005630) - 1210527..1211468 (+) 942 WP_001917624.1 ATPase, T2SS/T4P/T4SS family -
  C528_RS05665 (C528_005635) - 1211465..1211920 (+) 456 WP_001917623.1 hypothetical protein -
  C528_RS05670 (C528_005640) - 1211917..1212207 (+) 291 WP_001917622.1 hypothetical protein -
  C528_RS05675 (C528_005645) - 1212208..1212765 (+) 558 WP_001917621.1 hypothetical protein -
  C528_RS05680 (C528_005650) - 1212766..1214493 (+) 1728 WP_001917620.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46397.56 Da        Isoelectric Point: 10.1356

>NTDB_id=391167 C528_RS05640 WP_001917627.1 1208377..1209612(+) (comB10) [Helicobacter pylori A45]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIKKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIVTIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKVQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=391167 C528_RS05640 WP_001917627.1 1208377..1209612(+) (comB10) [Helicobacter pylori A45]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAAAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAACCCATTGTCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGTTCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

45.844

96.594

0.443