Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   DAAJ005_RS17050 Genome accession   NZ_CP044990
Coordinates   3126867..3127247 (-) Length   126 a.a.
NCBI ID   WP_370519738.1    Uniprot ID   -
Organism   Deinococcus sp. AJ005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3121867..3132247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAAJ005_RS17025 (DAAJ005_17020) - 3123230..3124198 (-) 969 WP_151848139.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DAAJ005_RS17030 (DAAJ005_17025) - 3124195..3124956 (-) 762 WP_151848140.1 trans-aconitate 2-methyltransferase -
  DAAJ005_RS17035 (DAAJ005_17030) - 3125150..3125611 (+) 462 WP_151848141.1 hypothetical protein -
  DAAJ005_RS17040 (DAAJ005_17035) - 3125656..3126231 (-) 576 WP_151848142.1 DUF1802 family protein -
  DAAJ005_RS17045 (DAAJ005_17040) - 3126426..3126785 (-) 360 WP_151848143.1 type II secretion system protein -
  DAAJ005_RS17050 (DAAJ005_17045) pilV 3126867..3127247 (-) 381 WP_370519738.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DAAJ005_RS17055 (DAAJ005_17050) - 3127626..3127988 (-) 363 WP_151848645.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DAAJ005_RS17060 (DAAJ005_17055) dnaB 3128455..3129801 (+) 1347 WP_151848144.1 replicative DNA helicase -
  DAAJ005_RS17065 (DAAJ005_17060) - 3129801..3130469 (+) 669 WP_151848145.1 NUDIX domain-containing protein -
  DAAJ005_RS17070 (DAAJ005_17065) - 3130757..3131518 (-) 762 WP_192930814.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13363.29 Da        Isoelectric Point: 8.4892

>NTDB_id=391151 DAAJ005_RS17050 WP_370519738.1 3126867..3127247(-) (pilV) [Deinococcus sp. AJ005]
MKNSTHGMKNNTQGFTLIELLIVIAIIGILAAVLIPNLLAARTKANESAASSFLRNTITAVETSRDSVTGKLTAVTNCLT
LQDKTAFPAGVASCAVTYGTADDYTINVTMQNGTKFDYDGKETKKS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=391151 DAAJ005_RS17050 WP_370519738.1 3126867..3127247(-) (pilV) [Deinococcus sp. AJ005]
ATGAAGAACAGCACCCACGGCATGAAGAACAACACCCAGGGCTTTACCCTGATCGAGCTGCTCATCGTCATCGCCATCAT
CGGGATTCTGGCTGCCGTGTTGATCCCCAACCTGCTGGCCGCGCGTACCAAGGCCAACGAGAGCGCCGCCTCCAGCTTCC
TGCGCAACACCATCACCGCTGTGGAAACCAGCCGCGATTCCGTGACCGGCAAGCTGACCGCCGTAACTAATTGCTTGACC
CTTCAGGATAAAACCGCATTCCCCGCTGGCGTCGCAAGCTGTGCTGTCACCTACGGAACCGCCGACGACTACACCATCAA
CGTCACCATGCAGAACGGCACCAAGTTCGACTACGATGGCAAGGAAACCAAGAAGAGCTGA

Domains

Predicted by InterproScan.

Pilin A4 (PilA4)

(46-125)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.413

96.032

0.484

Multiple sequence alignment