Detailed information NTG0391149

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DAAJ005_RS13475
• Genome accession: NZ_CP044990
• Coordinates: 2393095..2394252 (+)
• Length: 385 a.a.
• NCBI ID: WP_151847563.1
• Uniprot ID: A0A5J6YV08
• Organism: Deinococcus sp. AJ005
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2388095..2399252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DAAJ005_RS13460 (DAAJ005_13455)	rimO	2388712..2390205 (+)	1494	WP_151847560.1	30S ribosomal protein S12 methylthiotransferase RimO	-
DAAJ005_RS13465 (DAAJ005_13460)	-	2390221..2391351 (+)	1131	WP_151847561.1	GIY-YIG nuclease family protein	-
DAAJ005_RS13470 (DAAJ005_13465)	-	2391368..2392816 (-)	1449	WP_151847562.1	nitronate monooxygenase	-
DAAJ005_RS13475 (DAAJ005_13470)	pilD	2393095..2394252 (+)	1158	WP_151847563.1	A24 family peptidase	Machinery gene
DAAJ005_RS13480 (DAAJ005_13475)	-	2394263..2394880 (-)	618	WP_151847564.1	DNA-3-methyladenine glycosylase	-
DAAJ005_RS13485 (DAAJ005_13480)	-	2394881..2395453 (-)	573	WP_151847565.1	DUF2179 domain-containing protein	-
DAAJ005_RS13490 (DAAJ005_13485)	-	2395569..2395988 (-)	420	WP_151847566.1	hypothetical protein	-
DAAJ005_RS13495 (DAAJ005_13490)	-	2395992..2396948 (-)	957	WP_192930764.1	ATP-binding cassette domain-containing protein	-
DAAJ005_RS13500 (DAAJ005_13495)	-	2396969..2397748 (-)	780	WP_226342430.1	ABC transporter permease	-
DAAJ005_RS13505 (DAAJ005_13500)	-	2397867..2398694 (-)	828	WP_151847569.1	ABC-2 family transporter protein	-

Sequence

Protein

• Length: 385 a.a.
• Molecular weight: 40472.66 Da
• Isoelectric Point: 7.7185

>NTDB_id=391149 DAAJ005_RS13475 WP_151847563.1 2393095..2394252(+) (pilD) [Deinococcus sp. AJ005]
MSIDVLLVVFAGLFGLLVGSFSNVLIWRLPRGENIAFPPSHCPHCDHALSPRDLVPLFSWLSLGGKCRYCRAPIKSRYPV
VEALTGLGYAVIALLFPIALYGAGSLGLMVLFTLLLVGSAIDLDTYTIPDELTLPGVALGLLFGFFNGRNAVEGLPDLAG
AVNGALLGAGLLVAINQFGSWVLRRFRERQYPEFPIGFQQISLGLLAGAWLGPWWGAGVGLLSAAVNAVSRRVVRIPELL
TLGGLLLSVVVGSAGIGPGLILMVQGSLAAAGGVSLVAGVYWWVRHRPGAADEAENDGADDQYDASAMGFGDVKLAAVIG
AFLGWERLLVALLVAVFAGAIIGVIQLARKQENRVKFGPFLAFGALVALIWGAGIVASYRGMLGL

Nucleotide

• Length: 1158 bp

>NTDB_id=391149 DAAJ005_RS13475 WP_151847563.1 2393095..2394252(+) (pilD) [Deinococcus sp. AJ005]
GTGAGTATCGACGTCTTGCTGGTGGTCTTCGCTGGTCTCTTCGGCCTGCTGGTGGGATCGTTTTCCAACGTGCTGATCTG
GCGGCTGCCGCGTGGCGAGAACATCGCCTTTCCGCCCAGCCACTGCCCCCACTGTGACCATGCCCTTAGCCCGCGCGATC
TGGTGCCTCTGTTCTCGTGGCTGTCATTGGGCGGCAAATGCCGCTACTGCCGCGCGCCGATCAAGTCGCGGTATCCGGTT
GTGGAGGCGCTGACGGGTCTGGGCTACGCGGTCATTGCCCTGCTGTTTCCCATCGCCCTTTACGGCGCGGGCAGCCTGGG
CCTGATGGTGCTGTTCACGCTGCTGCTGGTGGGCAGCGCCATTGATCTGGACACCTACACCATTCCCGACGAGCTGACCT
TGCCGGGGGTGGCGCTGGGACTCCTATTCGGTTTTTTCAACGGCAGGAACGCGGTGGAGGGCTTGCCTGATCTGGCGGGC
GCGGTCAACGGGGCTTTGCTGGGCGCGGGATTGCTCGTCGCCATCAACCAGTTCGGCTCGTGGGTGCTGCGGCGCTTCCG
CGAACGGCAGTATCCCGAATTCCCCATCGGCTTTCAGCAGATCAGCCTGGGGTTGCTGGCAGGGGCGTGGCTGGGGCCGT
GGTGGGGCGCGGGCGTAGGCCTGCTGTCGGCGGCGGTCAACGCGGTCAGCCGCCGCGTGGTCCGCATTCCCGAACTGCTG
ACCCTGGGCGGCCTGCTCCTGAGCGTGGTGGTGGGCAGCGCAGGCATAGGCCCCGGCCTGATTCTGATGGTGCAGGGTTC
ACTGGCGGCGGCAGGCGGCGTGTCTTTGGTGGCGGGCGTGTACTGGTGGGTCAGACACCGCCCCGGCGCTGCGGATGAGG
CAGAGAACGACGGCGCGGATGACCAGTACGATGCCAGCGCGATGGGCTTCGGGGACGTGAAACTGGCTGCCGTGATCGGC
GCGTTCCTGGGCTGGGAGAGACTGCTGGTGGCCTTACTCGTGGCGGTCTTCGCCGGGGCGATCATTGGCGTGATTCAACT
GGCGCGCAAGCAGGAGAACCGGGTCAAGTTCGGCCCCTTTCTGGCCTTCGGTGCATTGGTGGCGCTGATCTGGGGCGCGG
GCATCGTGGCAAGCTACCGGGGGATGCTGGGGCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (234-344)

• Type IV leader peptidase family (Peptidase_A24) (109-222)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-95)

3D structure

• AlphaFold DB: A0A5J6YV08

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	70	100	0.709