Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DAAJ005_RS07250 Genome accession   NZ_CP044990
Coordinates   1107814..1109325 (-) Length   503 a.a.
NCBI ID   WP_255448052.1    Uniprot ID   -
Organism   Deinococcus sp. AJ005     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1109836..1136760 1107814..1109325 flank 511


Gene organization within MGE regions


Location: 1107814..1136760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAAJ005_RS07250 (DAAJ005_07250) comEC 1107814..1109325 (-) 1512 WP_255448052.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DAAJ005_RS07255 (DAAJ005_07255) - 1109863..1110780 (+) 918 WP_370519793.1 IS110 family transposase -
  DAAJ005_RS19130 - 1110914..1111293 (-) 380 Protein_1013 IS4 family transposase -
  DAAJ005_RS07260 (DAAJ005_07260) - 1111368..1115042 (+) 3675 WP_192930895.1 type ISP restriction/modification enzyme -
  DAAJ005_RS07265 (DAAJ005_07265) - 1115158..1115607 (+) 450 WP_192930896.1 RES family NAD+ phosphorylase -
  DAAJ005_RS19135 - 1115709..1116260 (-) 552 Protein_1016 transposase -
  DAAJ005_RS19140 - 1116256..1116560 (-) 305 Protein_1017 IS982 family transposase -
  DAAJ005_RS07275 (DAAJ005_07275) - 1116844..1118790 (-) 1947 WP_151846531.1 TnsD family Tn7-like transposition protein -
  DAAJ005_RS07280 (DAAJ005_07280) - 1118794..1120455 (-) 1662 WP_151846532.1 ATP-binding protein -
  DAAJ005_RS07285 (DAAJ005_07285) - 1120452..1122692 (-) 2241 WP_151846533.1 Mu transposase C-terminal domain-containing protein -
  DAAJ005_RS07290 (DAAJ005_07290) - 1122689..1123537 (-) 849 WP_192930897.1 TnsA endonuclease N-terminal domain-containing protein -
  DAAJ005_RS07295 (DAAJ005_07295) - 1124038..1125099 (-) 1062 Protein_1022 IS4 family transposase -
  DAAJ005_RS07300 (DAAJ005_07300) - 1125244..1126833 (-) 1590 WP_151846535.1 hypothetical protein -
  DAAJ005_RS07305 (DAAJ005_07305) - 1126862..1127884 (-) 1023 WP_151846536.1 hypothetical protein -
  DAAJ005_RS07310 (DAAJ005_07310) - 1128593..1129558 (+) 966 Protein_1025 IS630 family transposase -
  DAAJ005_RS07315 (DAAJ005_07315) - 1129654..1130712 (-) 1059 WP_151846537.1 IS4 family transposase -
  DAAJ005_RS07320 (DAAJ005_07320) - 1130753..1132546 (-) 1794 WP_151846538.1 DUF4209 domain-containing protein -
  DAAJ005_RS19145 - 1132574..1133026 (-) 453 WP_255448053.1 transposase family protein -
  DAAJ005_RS19150 - 1132992..1133411 (-) 420 WP_226342624.1 transposase family protein -
  DAAJ005_RS07330 (DAAJ005_07330) - 1133575..1133829 (-) 255 WP_151846539.1 helix-turn-helix domain-containing protein -
  DAAJ005_RS07335 (DAAJ005_07335) - 1133959..1134315 (+) 357 WP_151846540.1 hypothetical protein -
  DAAJ005_RS07340 (DAAJ005_07340) - 1134315..1134974 (+) 660 WP_151846541.1 hypothetical protein -
  DAAJ005_RS07345 (DAAJ005_07345) - 1135088..1135435 (+) 348 WP_151846542.1 hypothetical protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53527.14 Da        Isoelectric Point: 7.1618

>NTDB_id=391140 DAAJ005_RS07250 WP_255448052.1 1107814..1109325(-) (comEC) [Deinococcus sp. AJ005]
MALSGQNVALITVVLIWIFGWFGWPPLWRYGVPALLLMPYLVLVGVSPSITRAVIMGLTVLLALALGRGRPDPYGLMALT
ATVCLLLFPLWLLDIGFQLSFLAVLALTLSLKAAGKLPERWPLWLRLALVATVLAEFGTLPVIAATFGQMPLVGLPANLA
AGVVMTALVPLGFFAGLLGPAAILVNWLVGPLAALLLGIVETFGQAPVLTWGQVSPAGFVAYAVCAGAGVLWLWGRVRFR
AVLGVVMVCTVLTLLPGRLHPPREMVFVDIGQGDSTLIRLPHLTVLVDAGGSVNSDFDVGGKTVVPALRALGVRKIDVII
GTHADTDHIEGISGVLRALPVGELWIGQRKTDDPVLTTVLTVAKEEGVPVREARRGDQIASDGVTLTVLWPTGKVWSTED
NENSVAVRLQSGAWSTAILGDLPDPAENYLGLGHLSLLKVAHHGSRFSTDEALLQETTPTDAIISVGRNTYGHPNPEMLG
RLGAAGVKVWRTDQMGTIRWPIP

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=391140 DAAJ005_RS07250 WP_255448052.1 1107814..1109325(-) (comEC) [Deinococcus sp. AJ005]
ATGGCATTGTCGGGGCAGAACGTCGCGCTGATCACGGTGGTGCTGATCTGGATTTTCGGCTGGTTCGGCTGGCCTCCGCT
GTGGCGTTACGGTGTGCCTGCCCTGTTGCTCATGCCGTATCTGGTCCTGGTGGGAGTATCGCCCAGCATTACCCGCGCGG
TGATCATGGGCTTGACCGTACTGCTGGCACTGGCGCTGGGGCGTGGGCGGCCCGATCCTTACGGCCTGATGGCCCTGACC
GCCACGGTCTGCCTGCTGCTGTTCCCGCTATGGCTGCTGGACATCGGCTTTCAACTGTCGTTTCTGGCAGTACTAGCGCT
CACGCTGTCTCTAAAGGCAGCGGGCAAATTGCCGGAGCGCTGGCCGCTGTGGCTGCGGCTGGCACTGGTGGCCACCGTGC
TGGCCGAGTTCGGCACCCTGCCCGTCATTGCCGCCACCTTCGGGCAGATGCCCCTGGTGGGCCTGCCCGCCAATCTGGCG
GCGGGCGTGGTGATGACCGCGCTGGTGCCGCTGGGCTTTTTCGCCGGGCTGCTGGGGCCAGCGGCCATTCTGGTCAACTG
GCTGGTAGGCCCGCTGGCCGCCCTGTTGCTGGGCATCGTGGAAACCTTCGGGCAGGCCCCGGTGCTGACCTGGGGGCAGG
TGTCGCCCGCCGGATTCGTGGCCTACGCGGTCTGCGCGGGCGCAGGCGTGCTGTGGCTATGGGGCCGCGTGCGCTTCCGG
GCGGTGCTGGGCGTGGTGATGGTCTGCACGGTACTGACCCTATTGCCGGGGCGACTGCACCCACCGCGCGAGATGGTGTT
CGTGGACATCGGGCAAGGGGACTCAACTCTCATTCGCCTGCCCCACCTGACCGTGCTGGTGGACGCGGGCGGCTCGGTGA
ACAGTGATTTTGATGTGGGAGGCAAGACCGTGGTTCCCGCCCTGCGCGCGCTGGGAGTACGGAAAATCGACGTCATCATT
GGCACCCACGCCGATACGGACCACATTGAGGGCATCAGCGGCGTGCTGCGCGCCCTGCCCGTGGGTGAACTGTGGATCGG
CCAGCGCAAGACCGACGATCCGGTGCTGACCACCGTGCTGACCGTGGCAAAGGAGGAAGGCGTACCCGTCCGCGAGGCCC
GGCGCGGCGATCAGATCGCTTCGGACGGCGTGACGCTGACCGTGCTGTGGCCCACCGGCAAGGTCTGGAGTACCGAGGAC
AACGAGAACAGCGTGGCCGTGCGCCTCCAGTCTGGCGCGTGGTCCACCGCCATTCTGGGTGACCTGCCCGATCCTGCCGA
GAATTATCTGGGCCTGGGCCACCTGAGCCTGCTGAAAGTCGCGCACCACGGCAGCCGCTTTTCCACGGACGAGGCATTGC
TGCAAGAAACCACGCCCACCGACGCCATCATCAGCGTGGGCCGCAACACCTACGGCCACCCCAATCCAGAGATGCTGGGG
CGATTGGGGGCGGCGGGCGTCAAGGTCTGGCGAACCGATCAGATGGGGACGATCCGCTGGCCGATTCCATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(271-342)

Competence protein (Competence)

(1-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.81

100

0.662
  comA/comEC Thermus thermophilus HB27

37.325

99.602

0.372

Multiple sequence alignment