Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   DAAJ005_RS06075 Genome accession   NZ_CP044990
Coordinates   874024..874566 (+) Length   180 a.a.
NCBI ID   WP_192930884.1    Uniprot ID   -
Organism   Deinococcus sp. AJ005     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 869024..879566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAAJ005_RS06050 (DAAJ005_06050) - 869393..869983 (+) 591 WP_151846324.1 HD family hydrolase -
  DAAJ005_RS06055 (DAAJ005_06055) odhB 870035..871327 (-) 1293 WP_151846325.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase -
  DAAJ005_RS06060 (DAAJ005_06060) - 871383..871820 (-) 438 WP_151846326.1 DUF1801 domain-containing protein -
  DAAJ005_RS06065 (DAAJ005_06065) menC 871974..873083 (+) 1110 WP_151846327.1 o-succinylbenzoate synthase -
  DAAJ005_RS06070 (DAAJ005_06070) - 873164..873925 (+) 762 WP_075830759.1 acyl-CoA acyltransferase -
  DAAJ005_RS06075 (DAAJ005_06075) ddrB 874024..874566 (+) 543 WP_192930884.1 single-stranded DNA-binding protein Machinery gene
  DAAJ005_RS06080 (DAAJ005_06080) - 874661..875455 (-) 795 WP_192930885.1 S9 family peptidase -
  DAAJ005_RS06085 (DAAJ005_06085) - 875610..876449 (-) 840 WP_151846330.1 hypothetical protein -
  DAAJ005_RS06090 (DAAJ005_06090) - 876442..877125 (-) 684 WP_151846331.1 phosphatase PAP2 family protein -
  DAAJ005_RS06095 (DAAJ005_06095) - 877237..877716 (-) 480 WP_151846332.1 PepSY domain-containing protein -
  DAAJ005_RS06100 (DAAJ005_06100) - 877909..878784 (-) 876 WP_151846333.1 alkaline phosphatase family protein -
  DAAJ005_RS06105 (DAAJ005_06105) - 878781..879374 (-) 594 WP_151846334.1 DedA family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19886.33 Da        Isoelectric Point: 6.7368

>NTDB_id=391139 DAAJ005_RS06075 WP_192930884.1 874024..874566(+) (ddrB) [Deinococcus sp. AJ005]
MLHIEFITDLGAQVTVDVESADKLLDVQRQYGRLGWTSGAVPGGGYQFPLDNESDFDWSLIGARKWTNPEGEDMVIHRGL
AYRRRELEAVDSRKMKLPAAVKYSRGARGTDPEHVREKADGEFEYVTLAIFRGGKRQDRYATPGGGRAPQQAARPPAPRP
QPVAAARPAPVAVVEDETPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=391139 DAAJ005_RS06075 WP_192930884.1 874024..874566(+) (ddrB) [Deinococcus sp. AJ005]
TTGTTACACATAGAATTTATCACCGATCTAGGCGCGCAGGTGACCGTGGATGTGGAGAGTGCCGATAAGCTGCTGGACGT
GCAGCGTCAATATGGCCGTCTGGGCTGGACCAGCGGCGCAGTGCCAGGGGGCGGCTATCAGTTTCCGCTGGACAACGAGT
CCGATTTCGATTGGTCCTTAATCGGGGCCAGAAAATGGACCAACCCGGAAGGCGAGGACATGGTCATTCATAGGGGACTG
GCCTACCGTCGCCGCGAACTGGAAGCTGTGGACAGCCGCAAGATGAAGCTGCCTGCCGCCGTCAAGTACAGCCGGGGCGC
ACGCGGCACCGATCCCGAGCATGTCCGCGAAAAGGCCGACGGCGAATTCGAGTACGTGACGCTGGCGATCTTCCGGGGGG
GAAAACGCCAGGACCGCTACGCCACGCCTGGAGGAGGGCGCGCACCGCAACAGGCCGCCCGTCCACCCGCGCCCCGGCCC
CAGCCTGTGGCGGCGGCGCGGCCTGCCCCTGTGGCCGTGGTGGAAGACGAAACGCCGTTCTAA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

73.939

91.667

0.678

Multiple sequence alignment