Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   DAAJ005_RS03725 Genome accession   NZ_CP044990
Coordinates   341495..341941 (-) Length   148 a.a.
NCBI ID   WP_151845938.1    Uniprot ID   -
Organism   Deinococcus sp. AJ005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336495..346941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAAJ005_RS03695 (DAAJ005_03695) - 336572..337186 (+) 615 WP_151845933.1 GNAT family N-acetyltransferase -
  DAAJ005_RS03700 (DAAJ005_03700) - 337191..338114 (+) 924 WP_151845934.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein -
  DAAJ005_RS03705 (DAAJ005_03705) - 338178..338789 (-) 612 WP_151845935.1 site-2 protease family protein -
  DAAJ005_RS03710 (DAAJ005_03710) - 338811..339920 (-) 1110 WP_151845936.1 CCA tRNA nucleotidyltransferase -
  DAAJ005_RS03715 (DAAJ005_03715) - 340124..340957 (-) 834 WP_226342554.1 PilW family protein -
  DAAJ005_RS03720 (DAAJ005_03720) - 340954..341487 (-) 534 WP_151845937.1 type II secretion system protein -
  DAAJ005_RS03725 (DAAJ005_03725) pilV 341495..341941 (-) 447 WP_151845938.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DAAJ005_RS03730 (DAAJ005_03730) - 341950..344232 (-) 2283 WP_151845939.1 hypothetical protein -
  DAAJ005_RS03735 (DAAJ005_03735) ruvX 344344..344775 (-) 432 WP_151845940.1 Holliday junction resolvase RuvX -
  DAAJ005_RS03740 (DAAJ005_03740) - 344825..345613 (+) 789 WP_151845941.1 enoyl-CoA hydratase-related protein -
  DAAJ005_RS18850 - 345635..346378 (-) 744 WP_192930850.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15077.27 Da        Isoelectric Point: 10.0537

>NTDB_id=391138 DAAJ005_RS03725 WP_151845938.1 341495..341941(-) (pilV) [Deinococcus sp. AJ005]
MSGFTLIEVLVVIAIIGILGGIFGSSLIRSIRTAELREAANQVASDFQRARSLAQRGSTNVTITTSKGTASGSYSVDGQA
RTLPNNIKLVCKTNCGAGTAAATTYQAPYGELTNLGSVFTVQSPAGGVAALEIRIVGVTGKVILTGAS

Nucleotide


Download         Length: 447 bp        

>NTDB_id=391138 DAAJ005_RS03725 WP_151845938.1 341495..341941(-) (pilV) [Deinococcus sp. AJ005]
ATGTCTGGCTTCACTCTGATTGAGGTTCTGGTGGTCATCGCCATCATCGGGATTCTGGGGGGCATCTTCGGCAGCAGCCT
GATTCGCAGCATCCGCACCGCAGAACTGCGCGAGGCCGCCAATCAGGTCGCCAGCGACTTTCAGCGGGCGCGTTCGCTGG
CCCAGCGCGGCAGCACCAATGTGACCATCACCACGTCCAAAGGCACGGCGAGCGGCAGCTACAGCGTGGACGGTCAGGCC
CGGACCCTGCCCAACAACATCAAACTGGTGTGCAAGACCAACTGCGGCGCGGGCACGGCGGCGGCCACAACCTATCAGGC
CCCCTACGGCGAACTGACAAATCTGGGCAGCGTCTTCACCGTCCAGAGTCCGGCGGGTGGCGTCGCCGCGCTGGAAATCC
GAATCGTCGGCGTGACCGGCAAGGTCATTCTGACCGGGGCATCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-22)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.274

98.649

0.595

Multiple sequence alignment