Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DAAJ005_RS02690 Genome accession   NZ_CP044990
Coordinates   142142..142765 (+) Length   207 a.a.
NCBI ID   WP_151845774.1    Uniprot ID   A0A5J6YT75
Organism   Deinococcus sp. AJ005     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137142..147765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAAJ005_RS02665 (DAAJ005_02665) - 137489..138241 (+) 753 WP_192930832.1 PrsW family intramembrane metalloprotease -
  DAAJ005_RS02670 (DAAJ005_02670) moaD 138266..138943 (-) 678 WP_151845772.1 molybdopterin converting factor subunit 1 -
  DAAJ005_RS02680 (DAAJ005_02680) - 141066..141344 (-) 279 WP_151845773.1 hypothetical protein -
  DAAJ005_RS02685 (DAAJ005_02685) - 141550..142074 (+) 525 WP_075835060.1 hypothetical protein -
  DAAJ005_RS02690 (DAAJ005_02690) comF 142142..142765 (+) 624 WP_151845774.1 ComF family protein Machinery gene
  DAAJ005_RS02695 (DAAJ005_02695) - 142814..143227 (-) 414 WP_151845775.1 methylglyoxal synthase -
  DAAJ005_RS02700 (DAAJ005_02700) - 143371..143868 (-) 498 WP_151845776.1 YbjN domain-containing protein -
  DAAJ005_RS02705 (DAAJ005_02705) - 143967..145058 (+) 1092 WP_370519814.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  DAAJ005_RS02710 (DAAJ005_02710) - 145066..145857 (-) 792 WP_151845778.1 alpha/beta hydrolase -
  DAAJ005_RS02715 (DAAJ005_02715) - 145870..146298 (-) 429 WP_151845779.1 CoA-binding protein -
  DAAJ005_RS02720 (DAAJ005_02720) hemL 146295..147659 (-) 1365 WP_151845780.1 glutamate-1-semialdehyde 2,1-aminomutase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21970.39 Da        Isoelectric Point: 10.2035

>NTDB_id=391132 DAAJ005_RS02690 WP_151845774.1 142142..142765(+) (comF) [Deinococcus sp. AJ005]
MLTGLWRTLLPRACPGCGAQLGQEVGLCRACRAGLHAHVESHSPLRPRPEPHLVTLGRYRGVGRRAVRALKFGGARELAG
VLGEALAAGVPGNWAIGAVIPVPLHPSRQRQRGYNQAELLAREVARCLDTVYVDALSRTRATRQQARQQAAGRNEMAGAF
AVRPGGSLPGPLLLIDDVMTSGSTLIACQDALYEAGAGEIYVAVIAR

Nucleotide


Download         Length: 624 bp        

>NTDB_id=391132 DAAJ005_RS02690 WP_151845774.1 142142..142765(+) (comF) [Deinococcus sp. AJ005]
ATGTTGACTGGACTGTGGCGAACCCTGCTTCCTCGCGCCTGCCCTGGCTGCGGCGCGCAACTGGGCCAGGAGGTGGGGCT
GTGCCGCGCGTGCCGGGCTGGACTGCACGCCCATGTCGAGTCGCACAGTCCACTCCGCCCGCGTCCTGAGCCGCATCTGG
TCACCTTGGGCCGTTACCGGGGTGTGGGCCGCCGCGCCGTCCGCGCCCTGAAATTCGGCGGGGCGCGTGAGTTGGCCGGG
GTACTGGGCGAGGCGCTGGCAGCAGGCGTTCCAGGGAACTGGGCCATCGGCGCGGTTATTCCTGTTCCACTACATCCTTC
CCGCCAGCGCCAGCGTGGTTACAATCAGGCTGAATTGCTGGCCCGCGAGGTGGCCCGCTGCCTGGACACTGTCTATGTGG
ACGCTCTGAGCCGCACCCGCGCCACACGTCAGCAGGCCCGCCAGCAGGCCGCCGGGCGCAACGAGATGGCCGGAGCGTTC
GCGGTCAGACCGGGGGGAAGTCTGCCCGGTCCCCTGCTGTTAATCGATGATGTGATGACATCCGGGAGTACGCTCATTGC
GTGTCAGGACGCCCTGTATGAGGCGGGTGCAGGGGAAATTTACGTGGCTGTGATCGCCCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6YT75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.802

100

0.628

Multiple sequence alignment