Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DDE73_RS16500 Genome accession   NZ_CP044978
Coordinates   3176823..3177101 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis strain BT62     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3171823..3182101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE73_RS16480 (DDE73_16485) - 3173497..3174306 (+) 810 WP_103622414.1 papain-like cysteine protease family protein -
  DDE73_RS16485 (DDE73_16490) - 3174332..3174934 (+) 603 WP_000517271.1 hypothetical protein -
  DDE73_RS16490 (DDE73_16495) - 3175178..3175429 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  DDE73_RS16495 (DDE73_16500) - 3175804..3176682 (+) 879 WP_000397979.1 helix-turn-helix domain-containing protein -
  DDE73_RS16500 (DDE73_16505) abrB 3176823..3177101 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DDE73_RS16505 (DDE73_16510) - 3177718..3178968 (+) 1251 WP_103622415.1 hypothetical protein -
  DDE73_RS16510 (DDE73_16515) - 3179036..3179794 (+) 759 WP_000347994.1 TSUP family transporter -
  DDE73_RS16515 (DDE73_16520) - 3180047..3180706 (+) 660 WP_103622416.1 CatB-related O-acetyltransferase -
  DDE73_RS16520 (DDE73_16525) - 3180908..3181156 (+) 249 Protein_3135 acyltransferase family protein -
  DDE73_RS16525 (DDE73_16530) - 3181359..3181949 (+) 591 WP_135277604.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=391113 DDE73_RS16500 WP_000842216.1 3176823..3177101(+) (abrB) [Bacillus thuringiensis strain BT62]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=391113 DDE73_RS16500 WP_000842216.1 3176823..3177101(+) (abrB) [Bacillus thuringiensis strain BT62]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCTTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment