Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DDE73_RS10690 Genome accession   NZ_CP044978
Coordinates   2040584..2040907 (-) Length   107 a.a.
NCBI ID   WP_000578879.1    Uniprot ID   A0A9W5KZ99
Organism   Bacillus thuringiensis strain BT62     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2035584..2045907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE73_RS10665 (DDE73_10670) - 2035807..2037093 (+) 1287 WP_103622960.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DDE73_RS10670 (DDE73_10675) - 2037285..2037854 (+) 570 WP_000767792.1 signal peptidase I -
  DDE73_RS10675 (DDE73_10680) - 2037915..2038502 (+) 588 WP_000172852.1 CalY family protein -
  DDE73_RS10680 (DDE73_10685) - 2038637..2039533 (+) 897 WP_142391114.1 DUF4047 domain-containing protein -
  DDE73_RS10685 (DDE73_10690) calY 2039919..2040512 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  DDE73_RS10690 (DDE73_10695) sinR 2040584..2040907 (-) 324 WP_000578879.1 helix-turn-helix domain-containing protein Regulator
  DDE73_RS10695 (DDE73_10700) - 2040987..2041121 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  DDE73_RS10700 (DDE73_10705) inhA1 2041464..2043854 (+) 2391 WP_103622958.1 M6 family metalloprotease immune inhibitor InhA1 -
  DDE73_RS10705 (DDE73_10710) - 2044026..2045393 (+) 1368 WP_000028377.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12361.25 Da        Isoelectric Point: 9.6244

>NTDB_id=391108 DDE73_RS10690 WP_000578879.1 2040584..2040907(-) (sinR) [Bacillus thuringiensis strain BT62]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEINLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=391108 DDE73_RS10690 WP_000578879.1 2040584..2040907(-) (sinR) [Bacillus thuringiensis strain BT62]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAATTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment