Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ42_RS17545 Genome accession   NZ_CP053251
Coordinates   3588127..3588642 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain SCU-204     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3583127..3593642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ42_RS17520 (HHJ42_20940) ygaH 3583542..3583877 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  HHJ42_RS17525 (HHJ42_20950) emrR 3583968..3584498 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HHJ42_RS17530 (HHJ42_20955) emrA 3584625..3585797 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HHJ42_RS17535 (HHJ42_20960) emrB 3585814..3587352 (+) 1539 WP_001539415.1 multidrug efflux MFS transporter permease subunit EmrB -
  HHJ42_RS17540 (HHJ42_20965) tnpA 3587532..3587990 (+) 459 WP_000526115.1 IS200/IS605-like element IS200C family transposase -
  HHJ42_RS17545 (HHJ42_20970) luxS 3588127..3588642 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  HHJ42_RS17550 (HHJ42_20975) gshA 3588792..3590348 (-) 1557 WP_001539417.1 glutamate--cysteine ligase -
  HHJ42_RS17555 (HHJ42_20980) yqaA 3590421..3590849 (-) 429 WP_001287462.1 YqaA family protein -
  HHJ42_RS17560 (HHJ42_20985) yqaB 3590846..3591412 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HHJ42_RS17590 (HHJ42_21015) csrA 3592602..3592787 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=391092 HHJ42_RS17545 WP_001130208.1 3588127..3588642(-) (luxS) [Escherichia coli strain SCU-204]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=391092 HHJ42_RS17545 WP_001130208.1 3588127..3588642(-) (luxS) [Escherichia coli strain SCU-204]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737