Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DDE73_RS04145 Genome accession   NZ_CP044978
Coordinates   789449..790576 (+) Length   375 a.a.
NCBI ID   WP_098583651.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain BT62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 784449..795576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE73_RS04115 (DDE73_04120) spoIIIJ 784480..785256 (-) 777 WP_000727734.1 YidC family membrane integrase SpoIIIJ -
  DDE73_RS04120 (DDE73_04125) rnpA 785309..785656 (-) 348 WP_000726619.1 ribonuclease P protein component -
  DDE73_RS04125 (DDE73_04130) rpmH 785733..785867 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  DDE73_RS04130 (DDE73_04135) dnaA 786432..787772 (+) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  DDE73_RS04135 (DDE73_04140) dnaN 787951..789096 (+) 1146 WP_103622153.1 DNA polymerase III subunit beta -
  DDE73_RS04140 (DDE73_04145) yaaA 789224..789436 (+) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  DDE73_RS04145 (DDE73_04150) recF 789449..790576 (+) 1128 WP_098583651.1 DNA replication/repair protein RecF Machinery gene
  DDE73_RS04150 (DDE73_04155) gyrB 790615..792537 (+) 1923 WP_000435982.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DDE73_RS04155 (DDE73_04160) gyrA 792626..795097 (+) 2472 WP_001282864.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43346.67 Da        Isoelectric Point: 6.6001

>NTDB_id=391091 DDE73_RS04145 WP_098583651.1 789449..790576(+) (recF) [Bacillus thuringiensis strain BT62]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQAVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=391091 DDE73_RS04145 WP_098583651.1 789449..790576(+) (recF) [Bacillus thuringiensis strain BT62]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAAGCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment