Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   F9Z45_RS02180 Genome accession   NZ_CP044975
Coordinates   457605..459233 (+) Length   542 a.a.
NCBI ID   WP_159603195.1    Uniprot ID   A0A6P1ICX0
Organism   Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2)     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 452605..464233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9Z45_RS02155 (F9Z45_02155) argS 452762..454435 (+) 1674 WP_159603185.1 arginine--tRNA ligase -
  F9Z45_RS02160 (F9Z45_02160) - 454450..455145 (+) 696 WP_159603187.1 SPOR domain-containing protein -
  F9Z45_RS02165 (F9Z45_02165) - 455221..455874 (+) 654 WP_159603189.1 thiol:disulfide interchange protein DsbA/DsbL -
  F9Z45_RS02170 (F9Z45_02170) lptA 456060..456695 (+) 636 WP_159603191.1 lipopolysaccharide transport periplasmic protein LptA -
  F9Z45_RS02175 (F9Z45_02175) lptB 456701..457495 (+) 795 WP_159603193.1 LPS export ABC transporter ATP-binding protein -
  F9Z45_RS02180 (F9Z45_02180) rpoN/rpoN1 457605..459233 (+) 1629 WP_159603195.1 RNA polymerase factor sigma-54 Machinery gene
  F9Z45_RS02185 (F9Z45_02185) - 459230..460606 (+) 1377 WP_159603204.1 THUMP domain-containing protein -
  F9Z45_RS02190 (F9Z45_02190) - 460609..461052 (+) 444 WP_159603206.1 putative toxin-antitoxin system toxin component, PIN family -
  F9Z45_RS02195 (F9Z45_02195) - 461042..462166 (+) 1125 WP_159603208.1 hypothetical protein -
  F9Z45_RS02200 (F9Z45_02200) - 462206..462595 (+) 390 WP_159603210.1 DUF488 family protein -
  F9Z45_RS02205 (F9Z45_02205) - 462697..462984 (+) 288 WP_159603212.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 59617.01 Da        Isoelectric Point: 4.6038

>NTDB_id=391066 F9Z45_RS02180 WP_159603195.1 457605..459233(+) (rpoN/rpoN1) [Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2)]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERSEDLAEREAFGLEQTDAPVSVGEQIAEAALP
EAPGPMLSSTESSSSTSSDSSEGDAIEGKLDGATPVEESWEGDGTVEMAPDDSEWGGDAPARNNNSSGDDDTASAADLAR
AHISLQDHLHDQARCLRLSDEDRAALYFLIESLSDDGYIEDSLAELAAAWQALSGRVQTDDPNEGLEEREALEQRLTMAL
QLLQHMEPSGVGARSLAECLRLQILELRNTPEARAALAICGQSMELVAKRDVKRLCNLCGLDDETVRAALGLIARLEPKP
GRRFLDLERNVVVPDVLVTRAGRGFKVLLNPEVMPRLRVHDVYASAMRQNRGGRDNGGEAGHAAMQQRLQEARWFIKNIQ
QRFDTILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTETGGN
ASSTAVRALLKQFIAAEEAAKPLSDNQLSDLLREQGIECARRTVAKYREALRIAPANLRKSL

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=391066 F9Z45_RS02180 WP_159603195.1 457605..459233(+) (rpoN/rpoN1) [Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2)]
ATGAAACAAGGCCTGTCACTCAGGGTTTCGCAGCACCTGGCGCTCACGCCCCAGTTGCAGCAATCCATCCGCCTGCTGCA
ACTCTCCACGCTGGAGATGGCGCAGGAGGTCGAGCAAATGCTCGACGAGAATCCGTTCCTCGAACGCTCCGAAGACCTGG
CCGAGCGCGAAGCGTTTGGCCTGGAGCAGACCGACGCGCCGGTGAGCGTGGGCGAGCAGATCGCCGAGGCCGCCCTGCCC
GAAGCGCCCGGACCGATGCTCTCCAGCACCGAATCGAGCAGCAGCACGAGCAGCGACAGCAGCGAAGGCGATGCCATCGA
AGGCAAGCTCGACGGCGCCACGCCGGTGGAAGAGAGCTGGGAGGGCGACGGCACGGTGGAGATGGCGCCCGACGACAGCG
AGTGGGGTGGCGACGCGCCCGCGCGCAACAACAATTCGTCGGGCGACGACGACACCGCGAGCGCTGCCGATCTGGCCCGA
GCCCACATCAGCCTGCAGGACCACCTGCATGACCAGGCGCGCTGCCTGCGTCTCTCGGACGAAGACCGCGCCGCGCTGTA
CTTCCTGATCGAATCGCTCAGCGACGACGGCTACATCGAAGACAGCCTGGCCGAGCTGGCTGCGGCCTGGCAGGCCCTGT
CGGGACGTGTGCAAACCGACGACCCCAACGAAGGTCTGGAAGAACGCGAGGCGCTGGAGCAGCGCCTGACCATGGCCCTG
CAACTGCTGCAGCACATGGAGCCTTCCGGTGTGGGCGCGCGCAGCCTGGCCGAATGCCTGCGCCTGCAGATCCTGGAACT
GCGCAACACGCCCGAGGCGCGCGCGGCCCTGGCCATCTGCGGGCAGTCCATGGAGTTGGTGGCCAAGCGCGATGTGAAGC
GCCTGTGCAACCTGTGCGGCCTGGACGATGAAACCGTGCGCGCCGCACTCGGCCTCATTGCGCGGCTGGAACCCAAGCCG
GGTCGCCGCTTCCTGGACCTGGAGCGCAACGTGGTCGTGCCCGACGTGCTGGTCACGCGCGCTGGCCGCGGCTTCAAGGT
GCTGCTCAACCCCGAGGTGATGCCCCGCCTGCGCGTGCACGATGTGTACGCCAGCGCCATGCGCCAGAACCGCGGTGGAC
GCGACAACGGCGGCGAGGCCGGCCACGCCGCCATGCAGCAGCGCCTGCAGGAGGCGCGTTGGTTCATCAAGAACATCCAG
CAGCGCTTCGACACCATCCTGCGCGTGTCCAGCGCCATCGTGGAACGCCAGCGCAATTTCTTCATGCACGGCGAACTCGC
CATGCGCCCGCTGGTGCTGCGTGAGATCGCCGACGAGCTCGGCCTGCACGAATCCACCATCAGCCGCGTGACCACCGCCA
AGTACATGGCCACGCCCTTCGGCACCTACGAGCTCAAGTACTTCTTCGGCTCGTCGCTGGGGACCGAGACCGGTGGCAAC
GCGTCGAGCACGGCCGTGCGCGCGCTGCTCAAGCAGTTCATCGCCGCCGAAGAAGCCGCCAAGCCGCTGTCGGACAACCA
GCTCTCCGATCTGCTGCGCGAACAGGGCATCGAATGCGCGCGCCGCACCGTGGCGAAGTACCGCGAGGCGCTGCGAATCG
CGCCCGCGAACCTCAGAAAATCGCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(157-363)

Sigma-54, DNA binding domain (Sigma54_DBD)

(384-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1ICX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.092

100

0.502

Multiple sequence alignment