Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   E5O18_RS05385 Genome accession   NZ_CP044961
Coordinates   1131503..1132108 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain PNCS014881     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 1126503..1137108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5O18_RS05365 (E5O18_05365) - 1126898..1128658 (-) 1761 WP_000156454.1 AAA family ATPase -
  E5O18_RS05370 (E5O18_05370) matP 1128844..1129296 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  E5O18_RS05375 (E5O18_05375) ompA 1129368..1130420 (-) 1053 WP_001674965.1 porin OmpA -
  E5O18_RS05380 (E5O18_05380) sulA 1130777..1131286 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  E5O18_RS05385 (E5O18_05385) sxy/tfoX 1131503..1132108 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  E5O18_RS05390 (E5O18_05390) yccS 1132095..1134248 (-) 2154 WP_000950880.1 YccS family putative transporter -
  E5O18_RS05395 (E5O18_05395) - 1134267..1134713 (-) 447 WP_001261222.1 YccF domain-containing protein -
  E5O18_RS05400 (E5O18_05400) helD 1134837..1136891 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence


Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=390995 E5O18_RS05385 WP_001202375.1 1131503..1132108(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain PNCS014881]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=390995 E5O18_RS05385 WP_001202375.1 1131503..1132108(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain PNCS014881]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751


Multiple sequence alignment