Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   F9K07_RS27120 Genome accession   NZ_CP044549
Coordinates   5849824..5851464 (-) Length   546 a.a.
NCBI ID   WP_159596347.1    Uniprot ID   -
Organism   Hydrogenophaga sp. BPS33     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5844824..5856464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9K07_RS27095 (F9K07_27065) - 5846086..5846442 (-) 357 WP_159597126.1 GFA family protein -
  F9K07_RS27100 (F9K07_27070) - 5846513..5846902 (-) 390 WP_159596344.1 DUF488 family protein -
  F9K07_RS27105 (F9K07_27075) - 5846939..5848069 (-) 1131 WP_159596345.1 hypothetical protein -
  F9K07_RS27110 (F9K07_27080) - 5848062..5848490 (-) 429 WP_236581591.1 putative toxin-antitoxin system toxin component, PIN family -
  F9K07_RS27115 (F9K07_27085) - 5848496..5849827 (-) 1332 WP_159596346.1 THUMP domain-containing protein -
  F9K07_RS27120 (F9K07_27090) rpoN/rpoN1 5849824..5851464 (-) 1641 WP_159596347.1 RNA polymerase factor sigma-54 Machinery gene
  F9K07_RS27125 (F9K07_27095) lptB 5851475..5852215 (-) 741 WP_159597128.1 LPS export ABC transporter ATP-binding protein -
  F9K07_RS27130 (F9K07_27100) lptA 5852272..5852904 (-) 633 WP_236581612.1 lipopolysaccharide transport periplasmic protein LptA -
  F9K07_RS27135 (F9K07_27105) - 5853059..5853703 (-) 645 WP_159596349.1 thiol:disulfide interchange protein DsbA/DsbL -
  F9K07_RS27140 (F9K07_27110) - 5853776..5854477 (-) 702 WP_159596350.1 SPOR domain-containing protein -
  F9K07_RS27145 (F9K07_27115) argS 5854492..5856165 (-) 1674 WP_159596351.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 59957.26 Da        Isoelectric Point: 4.5944

>NTDB_id=390960 F9K07_RS27120 WP_159596347.1 5849824..5851464(-) (rpoN/rpoN1) [Hydrogenophaga sp. BPS33]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERSEDTAERETFGLEQSDVPVSAGEQISDAALA
EPPSAPPSSGESTSSTSADTGDGEGLEGKLDGASPVEESWEGDGTVEMSPDDGEWGGDAPARNNGSNSDGDDTATAADLA
RVPVSLQDHLHEQARCLRLSDEDSAALYFLIESLNEDGYLVDSLSDLATAWWHMSDRSRRVGGDDSPAGFEEIEVLEQRL
AMALQLLQHMDPTGVGARDLAECLRLQILELRNTPEARAALAICGQPLELMAKRDIKRLCNLCGIDDETARGALALIARL
EPKPGRRFIDVERNVVVPDVIVTHAGRGFKVILNPDVMPRLRVHDVYANAMRQNRGGRDSGGEAGHAAMQQRLQEARWFI
KNIQQRFDTILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTE
TGGNASSTAVRALLKQFISAEEPTKPLSDNQLSDLLREQGIECARRTVAKYREALRIAPANLRKSL

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=390960 F9K07_RS27120 WP_159596347.1 5849824..5851464(-) (rpoN/rpoN1) [Hydrogenophaga sp. BPS33]
ATGAAACAAGGCCTCTCACTGCGGGTTTCGCAGCACCTGGCGCTCACGCCTCAGTTGCAGCAGTCGATCCGCCTGCTGCA
GCTCTCCACGCTGGAGATGGCGCAGGAAGTCGAGCAGATGCTCGACGAAAACCCGTTTCTCGAACGTTCCGAAGACACGG
CCGAGCGCGAAACCTTCGGCCTGGAGCAGTCCGATGTACCGGTGAGTGCGGGTGAACAGATTTCCGACGCCGCACTGGCC
GAACCGCCCAGCGCGCCGCCGAGCAGCGGCGAATCCACCAGCAGCACCAGTGCCGATACGGGCGACGGTGAAGGCCTGGA
GGGCAAGCTCGACGGCGCGAGCCCCGTGGAGGAAAGCTGGGAAGGCGACGGCACGGTGGAGATGTCGCCCGACGACGGCG
AATGGGGCGGCGACGCGCCCGCGCGCAACAACGGCAGCAACAGCGATGGCGACGACACGGCGACCGCCGCCGATCTTGCG
CGCGTGCCGGTGAGCCTGCAGGACCATCTGCACGAACAGGCGCGTTGCCTGCGCCTGTCCGACGAAGACAGTGCCGCGTT
GTACTTCCTGATCGAGTCGCTCAACGAAGACGGCTACCTGGTGGACAGCCTGAGCGATCTGGCCACGGCCTGGTGGCACA
TGTCGGACCGTTCGCGCCGGGTCGGTGGTGACGATTCGCCGGCCGGCTTTGAAGAGATCGAAGTGCTGGAGCAGCGCCTG
GCCATGGCGCTGCAACTGCTGCAGCACATGGACCCCACCGGCGTGGGCGCGCGCGACCTGGCCGAATGCCTGCGGCTGCA
GATCCTGGAGCTGCGCAACACCCCCGAGGCGCGCGCCGCGCTGGCCATCTGTGGCCAGCCGCTGGAGCTCATGGCCAAGC
GCGACATCAAGCGCCTGTGCAATCTTTGCGGCATCGACGACGAGACCGCGCGCGGCGCGCTCGCGCTCATCGCCCGCCTG
GAGCCCAAGCCAGGCCGCCGTTTCATCGATGTGGAGCGCAACGTGGTCGTGCCCGACGTGATCGTCACGCACGCCGGGCG
CGGTTTCAAGGTCATCCTCAACCCGGACGTAATGCCACGGCTGCGCGTGCACGATGTCTACGCCAACGCCATGCGGCAAA
ACCGGGGCGGGCGCGACAGCGGTGGCGAAGCCGGCCACGCGGCGATGCAGCAGCGCCTGCAGGAGGCGCGCTGGTTCATC
AAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTCTCCAGCGCCATCGTCGAGCGCCAGCGCAACTTCTTCATGCA
CGGCGAACTCGCCATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAGCTGGGCCTGCACGAGTCCACCATCAGCCGCG
TGACCACGGCGAAGTACATGGCCACGCCGTTCGGCACCTACGAACTCAAGTATTTCTTCGGCTCCTCGCTCGGCACGGAG
ACGGGGGGCAATGCGTCGAGCACGGCGGTGCGCGCCTTGCTCAAACAGTTCATCTCGGCCGAGGAACCGACCAAGCCGCT
GTCGGACAACCAGCTCTCCGACCTGTTGCGCGAGCAGGGCATCGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGCGAGG
CGCTGCGCATCGCGCCCGCCAATTTGAGAAAGTCGCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(161-367)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(388-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.366

100

0.516

Multiple sequence alignment