Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F9K07_RS02220 Genome accession   NZ_CP044549
Coordinates   485637..487013 (-) Length   458 a.a.
NCBI ID   WP_159588964.1    Uniprot ID   A0A6P1IVM3
Organism   Hydrogenophaga sp. BPS33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 480637..492013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9K07_RS02190 (F9K07_02195) rfbA 480885..481778 (-) 894 WP_159588951.1 glucose-1-phosphate thymidylyltransferase RfbA -
  F9K07_RS02195 (F9K07_02200) rfbD 481797..482696 (-) 900 WP_159588953.1 dTDP-4-dehydrorhamnose reductase -
  F9K07_RS02200 (F9K07_02205) rfbB 482693..483763 (-) 1071 WP_159588956.1 dTDP-glucose 4,6-dehydratase -
  F9K07_RS02205 (F9K07_02210) - 483862..484068 (-) 207 WP_159588958.1 zinc-finger domain-containing protein -
  F9K07_RS02210 (F9K07_02215) - 484079..485029 (-) 951 WP_159588960.1 branched-chain amino acid transaminase -
  F9K07_RS02215 (F9K07_02220) - 485088..485555 (-) 468 WP_159588962.1 glycerate kinase -
  F9K07_RS02220 (F9K07_02225) radA 485637..487013 (-) 1377 WP_159588964.1 DNA repair protein RadA Machinery gene
  F9K07_RS02225 (F9K07_02230) - 487042..488142 (+) 1101 WP_159588966.1 hypothetical protein -
  F9K07_RS02230 (F9K07_02235) - 488121..489170 (-) 1050 WP_159588968.1 nitronate monooxygenase -
  F9K07_RS02235 (F9K07_02240) hpaR 489249..489749 (+) 501 WP_159588970.1 homoprotocatechuate degradation operon regulator HpaR -
  F9K07_RS02240 (F9K07_02245) - 489746..490396 (+) 651 WP_159588972.1 fumarylacetoacetate hydrolase family protein -
  F9K07_RS02245 (F9K07_02250) - 490393..491166 (+) 774 WP_159588974.1 fumarylacetoacetate hydrolase family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48211.50 Da        Isoelectric Point: 7.2040

>NTDB_id=390947 F9K07_RS02220 WP_159588964.1 485637..487013(-) (radA) [Hydrogenophaga sp. BPS33]
MAKDKTQYICSECGGSSPKWLGKCPHCNAWNTLIESVAESAAPSKNRFAALAKTAEVTTLADIEATDVQRTPTGHDELDR
VLGGGIVEGGVVLIGGDPGIGKSTLLLQALDSLQRAGLKTLYVTGEESGAQVALRSRRLGLDGSQVSVLAEIQLEKILAT
LDATKPTIAVIDSIQTVYSEQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDTVLYFEG
DTHSSFRLIRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSCVMVTLEGTRPMLVEIQALVDSGGPSP
RRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKPLPKGFLAFGEVGLAGEV
RPAPRGQDRLKEAAKLGFSVAVVPKANLPRKNDKAFEGLTVHGVDRIEEAMELARSLA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=390947 F9K07_RS02220 WP_159588964.1 485637..487013(-) (radA) [Hydrogenophaga sp. BPS33]
ATGGCCAAAGACAAAACCCAATACATCTGCAGCGAGTGCGGCGGCAGCAGCCCCAAGTGGCTGGGCAAGTGCCCGCACTG
CAATGCGTGGAACACGCTGATCGAATCGGTCGCGGAGTCTGCCGCGCCCTCGAAAAACCGGTTTGCCGCCCTGGCCAAGA
CGGCGGAAGTGACCACGCTGGCCGACATCGAAGCCACCGACGTGCAGCGCACGCCCACCGGACACGACGAGCTCGACCGC
GTGCTCGGCGGCGGCATCGTCGAAGGCGGCGTGGTGTTGATCGGCGGCGACCCGGGCATCGGCAAATCCACCTTGCTGCT
GCAGGCGCTGGATTCGCTGCAGCGCGCCGGCCTGAAAACGCTTTATGTGACAGGCGAAGAAAGCGGCGCGCAGGTGGCCT
TGCGCTCGCGCCGGCTCGGGCTGGACGGCTCTCAGGTCAGCGTGCTGGCCGAGATCCAGCTCGAGAAGATCCTCGCCACC
CTCGACGCGACGAAACCCACGATCGCCGTGATCGACTCGATCCAGACCGTGTACTCCGAGCAGCTCACCTCCGCGCCGGG
CTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCACCTCACGCGCGCGGCCAAGGCCAGCGGCACGGCCATCGTGCTGGTGG
GCCATGTGACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTGCTGTACTTCGAGGGC
GACACGCACAGCAGCTTTCGCCTGATCCGCGCCATCAAGAACCGCTTTGGCGCGGTCAACGAGATCGGCGTGTTCGCCAT
GACCGAGAAAGGCCTCAAGGGCGTGAGCAACCCGAGCGCGATTTTCCTCTCCCAGCATTCGGAGCCGGTACCCGGCAGTT
GCGTGATGGTGACGCTGGAAGGCACGCGGCCCATGCTGGTGGAAATCCAGGCGCTGGTGGACAGCGGCGGGCCCTCACCG
CGCCGCCTGAGCGTGGGCCTGGACCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCCGGCGTGGCCTG
CATGGACCAGGACGTGTTCGTCAACGCGGTGGGCGGCGTGCGCATCAGCGAACCGGCGGCCGACTTGGCGGTCATGCTGG
CCATCACCTCCAGCCTGCGCGGCAAGCCGCTGCCCAAGGGCTTTCTCGCCTTTGGCGAGGTCGGCCTGGCTGGTGAGGTG
CGGCCCGCGCCGCGCGGACAGGACCGGCTCAAGGAAGCGGCCAAGCTCGGTTTCAGCGTGGCCGTGGTCCCCAAGGCCAA
CCTGCCGCGCAAGAACGACAAGGCCTTCGAAGGCCTGACGGTGCACGGCGTGGACCGCATCGAAGAGGCGATGGAACTGG
CCCGCAGCCTGGCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1IVM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.563

0.487
  radA Streptococcus mitis NCTC 12261

46.07

100

0.461
  radA Streptococcus pneumoniae D39

45.969

100

0.461
  radA Streptococcus pneumoniae TIGR4

45.969

100

0.461
  radA Streptococcus pneumoniae R6

45.969

100

0.461
  radA Streptococcus pneumoniae Rx1

45.969

100

0.461
  radA Streptococcus mitis SK321

47.674

93.886

0.448

Multiple sequence alignment