Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F7984_RS16080 Genome accession   NZ_CP044545
Coordinates   3329795..3330751 (-) Length   318 a.a.
NCBI ID   WP_066106731.1    Uniprot ID   A0A1B9ALX8
Organism   Pradoshia sp. D12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3324795..3335751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7984_RS16050 (F7984_16050) - 3325009..3325311 (-) 303 WP_139892327.1 DUF6509 family protein -
  F7984_RS16055 (F7984_16055) - 3325462..3326151 (+) 690 WP_066106751.1 polysaccharide deacetylase family protein -
  F7984_RS16060 (F7984_16060) - 3326283..3326615 (-) 333 WP_066106747.1 antibiotic biosynthesis monooxygenase family protein -
  F7984_RS16065 (F7984_16065) - 3326677..3327714 (-) 1038 WP_066106744.1 siderophore ABC transporter substrate-binding protein -
  F7984_RS16070 (F7984_16070) - 3328091..3328855 (-) 765 WP_066106739.1 ABC transporter ATP-binding protein -
  F7984_RS16075 (F7984_16075) - 3328852..3329808 (-) 957 WP_140461702.1 iron chelate uptake ABC transporter family permease subunit -
  F7984_RS16080 (F7984_16080) ceuB 3329795..3330751 (-) 957 WP_066106731.1 ABC transporter permease Machinery gene
  F7984_RS16085 (F7984_16085) - 3331148..3332212 (+) 1065 WP_139892325.1 YeeE/YedE family protein -
  F7984_RS16090 (F7984_16090) - 3332234..3332461 (+) 228 WP_139892323.1 sulfurtransferase TusA family protein -
  F7984_RS16095 (F7984_16095) - 3332509..3333432 (-) 924 WP_373925484.1 MBL fold metallo-hydrolase -
  F7984_RS16100 (F7984_16100) - 3333457..3334893 (-) 1437 WP_140461703.1 NAD-dependent succinate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34769.94 Da        Isoelectric Point: 9.5540

>NTDB_id=390927 F7984_RS16080 WP_066106731.1 3329795..3330751(-) (ceuB) [Pradoshia sp. D12]
MRLWMLVLVTIILSFISLFIGAIDIKPSDLLDLDSDKTQIFLMSRLPRLMAIILAGAGMGIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGVIVSMVFFTNMSYMGQILFSFAFALIGTFIFMNLLERIKFKDVIFVPLIGIMYGNIIGAISTFIGYEADVL
QNVDTFFLGSFTLIVSGRYELLYVAVPAIIIAYLYANKFTVAGMGEDFAKNLGLSYRTVLNIGLVIVAVISTTVILTVGI
IPFLGLIVPNLVSLYLGDNLRKTIPHTIFMGAAFLLACDILSRLIVHPYEIPVNTTVAVIGSAIFLIMLFRGKAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=390927 F7984_RS16080 WP_066106731.1 3329795..3330751(-) (ceuB) [Pradoshia sp. D12]
ATGAGACTATGGATGTTAGTATTAGTAACTATTATCCTATCCTTTATTTCGCTATTTATAGGGGCTATTGATATTAAACC
GAGTGATTTACTAGATTTAGATTCAGACAAGACGCAAATCTTCTTGATGAGTCGATTACCACGGTTAATGGCCATTATTT
TAGCTGGTGCAGGAATGGGAATTGCGGGCTTAATTATGCAAAGCTTAAGCCGAAACAAGTTTGTATCACCGACAACGGCT
GGTACGCTAGATGCAGCAAAACTAGGTGTCATTGTCTCTATGGTGTTTTTTACTAATATGTCCTATATGGGGCAAATACT
ATTTAGTTTTGCATTCGCATTAATTGGTACATTTATTTTTATGAATTTACTTGAGCGCATTAAATTCAAAGATGTCATAT
TCGTCCCTCTTATCGGAATTATGTACGGTAATATCATCGGGGCGATTTCAACATTCATTGGATATGAAGCGGATGTTCTG
CAAAATGTAGATACGTTTTTCTTGGGGAGTTTTACCTTGATCGTTTCAGGACGCTATGAACTGTTGTATGTAGCGGTTCC
AGCAATTATCATTGCTTATCTATATGCAAATAAATTCACAGTAGCTGGTATGGGTGAGGATTTTGCGAAAAACCTGGGTT
TAAGTTATCGTACAGTGTTAAACATTGGTCTAGTTATCGTAGCGGTAATTTCTACAACAGTCATTTTAACGGTAGGGATT
ATTCCGTTTTTAGGGTTGATTGTACCAAATCTGGTTTCCCTTTATCTGGGCGATAATTTACGTAAAACAATCCCTCATAC
AATATTCATGGGGGCGGCATTCTTATTGGCATGTGATATTCTAAGCCGATTGATTGTCCATCCATATGAGATACCTGTAA
ATACTACAGTTGCAGTAATTGGCAGTGCGATCTTCTTAATTATGTTGTTTAGGGGGAAAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9ALX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.885

98.113

0.519

Multiple sequence alignment