Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   F7984_RS14230 Genome accession   NZ_CP044545
Coordinates   2963565..2965934 (-) Length   789 a.a.
NCBI ID   WP_140461978.1    Uniprot ID   -
Organism   Pradoshia sp. D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2958565..2970934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7984_RS14210 (F7984_14210) - 2959778..2959975 (-) 198 WP_140461980.1 hypothetical protein -
  F7984_RS14215 (F7984_14215) dtd 2960197..2960640 (-) 444 WP_066105443.1 D-aminoacyl-tRNA deacylase -
  F7984_RS14220 (F7984_14220) - 2960651..2962846 (-) 2196 WP_140461979.1 RelA/SpoT family protein -
  F7984_RS14225 (F7984_14225) - 2963062..2963574 (-) 513 WP_066105448.1 adenine phosphoribosyltransferase -
  F7984_RS14230 (F7984_14230) recJ 2963565..2965934 (-) 2370 WP_140461978.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  F7984_RS14235 (F7984_14235) - 2966002..2966292 (-) 291 WP_066105454.1 lipopolysaccharide assembly LapA domain-containing protein -
  F7984_RS14240 (F7984_14240) secDF 2966555..2968822 (-) 2268 WP_140461977.1 protein translocase subunit SecDF -
  F7984_RS14245 (F7984_14245) - 2969059..2969397 (-) 339 WP_066105460.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 89147.12 Da        Isoelectric Point: 4.8782

>NTDB_id=390920 F7984_RS14230 WP_140461978.1 2963565..2965934(-) (recJ) [Pradoshia sp. D12]
MLQSKTRWLLKKADETIINLFMQELEQPRIVATLLVNRGIKTVEEARSFLYAAQQDFYDPFLLSGMEEAMRRIVKAVKNN
EKITIFGDYDADGVSSTTILMLTLKIMGAEHVSWYIPNRFTEGYGPNEEAFRFIKEQGTTLLITVDCGISAIHEAQVAKE
LGMDYIVTDHHEPGPELPQALAILHPKKPGETYPFSELAGAGVAMKLAHALLGELPDELIGIAAIGTVADLVPLHDENRL
IAIKGIQALKKSTRPGILALCQKAGIQRDSLNEDSIGFGLAPRINAVGRLESADPAVELLLTESQEEADSIADEIDLLNK
ERQSIVKEMTQEAIEEVENNYPPETNPVLIIAREGWNTGVVGIVASKLVEKYYRPTIVLSIDREKGTAKGSARSIPGFDL
FQNLSLNRELLPHFGGHPMAAGMTLKIEDVEELRQRLINQANEILTEEDFQPVTEIDSLVAIDEISLTLIQQMSQLAPYG
MQNPKPRILIEDASITTSRKIGADKTHLKLQLEQNDAGLDSIGFGLGEFLDHLSPQAKVSVIGELAINEWNNIKKPQLFL
QDLSVPGWQLFDCRSDKGKIHVQTVPSPRKIILFQEESRVWLTEFTKENDQIIHITSLEAAQQETLDGYHVVLADLPSQK
DIFEALFIGKLPKRVYVYFRTTQNDYFSAFPTRDQFKWYYALLAKKGPISYKELRSMLNIHKGWSKENIDFMTKVFFELE
FVTINNGLIDLVRTSMKRDLQESKTYQERQARMALEQELLYASFNQLYEYLGKLIRSHMENKEETEQWI

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=390920 F7984_RS14230 WP_140461978.1 2963565..2965934(-) (recJ) [Pradoshia sp. D12]
ATGTTACAATCAAAAACACGTTGGCTTTTAAAAAAAGCTGATGAAACCATTATAAATCTATTCATGCAAGAACTTGAACA
GCCTCGTATTGTGGCTACATTATTGGTCAACAGAGGAATAAAGACCGTAGAAGAAGCGCGGTCTTTTTTGTATGCAGCCC
AGCAGGATTTCTATGATCCGTTTTTACTATCAGGTATGGAAGAAGCTATGAGACGGATTGTGAAAGCTGTAAAAAACAAC
GAAAAGATTACTATATTCGGAGACTATGATGCCGATGGGGTCAGCAGTACGACCATCTTAATGCTCACGCTTAAAATAAT
GGGAGCAGAACATGTGTCATGGTATATTCCAAATCGCTTTACAGAAGGCTATGGCCCAAATGAAGAGGCTTTTCGATTCA
TAAAAGAACAGGGAACTACGTTACTTATCACAGTAGACTGTGGCATTTCGGCCATTCATGAGGCTCAAGTGGCGAAAGAA
TTGGGAATGGATTATATTGTGACGGACCATCATGAACCGGGTCCTGAGTTACCGCAGGCATTAGCTATCCTTCATCCCAA
AAAGCCGGGTGAAACTTATCCGTTTTCAGAGTTGGCAGGTGCAGGTGTGGCAATGAAATTGGCCCATGCTTTACTTGGTG
AGTTGCCTGATGAGTTGATTGGCATTGCTGCAATTGGAACAGTAGCTGACTTGGTTCCTCTTCATGATGAAAATAGATTA
ATTGCGATTAAAGGGATTCAGGCATTAAAGAAATCAACGAGACCGGGAATCCTTGCCCTTTGTCAAAAAGCAGGTATTCA
GCGCGATTCCTTAAATGAGGATTCCATTGGATTTGGATTGGCACCGAGAATAAATGCTGTAGGAAGATTGGAATCGGCAG
ATCCAGCTGTAGAGCTTTTACTTACAGAAAGTCAGGAAGAAGCTGATTCGATAGCCGACGAAATAGATTTATTGAATAAA
GAGCGGCAATCAATCGTAAAAGAAATGACCCAGGAAGCGATTGAGGAAGTGGAGAATAACTATCCACCTGAAACCAATCC
GGTCCTAATTATTGCCCGTGAAGGATGGAATACTGGTGTAGTAGGGATTGTAGCCAGTAAGCTTGTAGAAAAGTATTATC
GTCCGACGATCGTATTAAGTATTGATCGTGAGAAAGGAACAGCAAAGGGATCTGCACGCAGTATTCCAGGATTTGATCTT
TTTCAAAACTTATCTTTAAACAGAGAACTGCTTCCTCATTTTGGGGGCCATCCTATGGCTGCTGGTATGACATTGAAAAT
AGAAGATGTTGAGGAATTGAGACAACGATTGATCAATCAGGCTAATGAAATTCTAACAGAAGAAGATTTCCAGCCTGTTA
CTGAGATAGATAGCTTAGTTGCGATTGATGAAATTTCATTAACGCTTATTCAGCAAATGTCCCAGCTTGCACCGTACGGG
ATGCAAAACCCAAAACCGAGGATTTTGATTGAGGATGCCTCAATAACAACTTCCAGGAAAATTGGGGCAGATAAAACTCA
TCTTAAACTTCAGCTCGAACAAAATGACGCTGGGTTAGATAGCATTGGGTTTGGATTAGGAGAGTTCCTTGATCATTTAT
CTCCGCAGGCCAAGGTATCTGTAATTGGGGAATTGGCGATAAATGAATGGAATAATATAAAAAAGCCCCAATTGTTTTTA
CAGGATCTTTCTGTACCAGGGTGGCAGTTATTTGATTGTCGCAGCGATAAGGGGAAAATACATGTTCAGACAGTGCCGTC
TCCACGCAAAATCATCTTATTTCAGGAAGAGAGTAGGGTGTGGCTGACGGAATTTACTAAAGAGAATGATCAAATTATCC
ATATTACCTCTTTAGAAGCAGCTCAACAGGAAACTTTAGACGGCTATCATGTAGTTTTAGCAGATTTACCTTCACAAAAA
GATATATTTGAAGCACTTTTTATTGGAAAATTGCCTAAAAGAGTGTATGTTTACTTTCGTACCACTCAAAATGATTATTT
CTCAGCGTTTCCAACAAGAGACCAATTTAAATGGTATTATGCCTTGTTGGCAAAAAAAGGACCTATTTCATATAAAGAAC
TGCGTTCCATGCTGAATATTCATAAAGGCTGGTCAAAAGAAAATATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGAG
TTTGTTACAATAAATAACGGACTCATTGATTTGGTAAGGACCAGTATGAAACGGGATCTCCAAGAATCTAAAACCTATCA
AGAAAGACAAGCAAGAATGGCGTTGGAACAAGAGCTTCTATACGCTTCATTCAATCAGCTTTATGAATACCTTGGCAAGT
TGATTCGATCCCACATGGAAAACAAGGAGGAAACTGAGCAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-562)

DHHA1 domain (DHHA1)

(317-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-771)

DHH family (DHH)

(82-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.038

100

0.531

Multiple sequence alignment