Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   F7984_RS14145 Genome accession   NZ_CP044545
Coordinates   2942015..2944441 (-) Length   808 a.a.
NCBI ID   WP_225983612.1    Uniprot ID   -
Organism   Pradoshia sp. D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2937015..2949441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7984_RS14125 (F7984_14125) alaS 2937404..2940043 (-) 2640 WP_066105403.1 alanine--tRNA ligase -
  F7984_RS14130 (F7984_14130) - 2940392..2941459 (-) 1068 WP_306821560.1 AI-2E family transporter -
  F7984_RS14135 (F7984_14135) - 2941572..2941703 (-) 132 WP_077248072.1 YrzQ family protein -
  F7984_RS14140 (F7984_14140) - 2941736..2941924 (-) 189 WP_066105409.1 hypothetical protein -
  F7984_RS14145 (F7984_14145) recD2 2942015..2944441 (-) 2427 WP_225983612.1 ATP-dependent RecD-like DNA helicase Machinery gene
  F7984_RS14150 (F7984_14150) - 2944458..2945114 (-) 657 WP_140461987.1 tetratricopeptide repeat protein -
  F7984_RS14155 (F7984_14155) - 2945357..2946064 (+) 708 WP_175354277.1 GDSL-type esterase/lipase family protein -
  F7984_RS14160 (F7984_14160) - 2946078..2948780 (-) 2703 WP_225983613.1 cation-translocating P-type ATPase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 90979.66 Da        Isoelectric Point: 4.9194

>NTDB_id=390919 F7984_RS14145 WP_225983612.1 2942015..2944441(-) (recD2) [Pradoshia sp. D12]
MEQESFVFSDNDKPFIKGTHLVTIFHNEQNLYSVVRIRVKETNLNYDEKEAVITGYFPPIHEEEIYTFYGKMKEHPRFGI
QFHVDTFQREVPESKEGVIAYLSGSLFKGIGKKIAESIVEKLGEKAISKILANPSLLDQIPKLSGEKAKQLYDTLAANQG
LEQIMINLSSLGFGPQLSMKIYQAYKEDTISIIEQNPYQLVETIEGIGFTRADEIGLQLGIGGSHPSRIKAAILYTLDRS
CVQDGHSYTEAEELLISVKTLLEQNQNVTITFEQITESLIQLGEEGKIIGEEKRFYMPSLYFSEKGIVTNIKRIMSQDSY
ADQFPESEFLLELGKLEERIGMEYAEEQKDAIFKALHSPMLILTGGPGTGKTTVIKGIVELYSELHGLSLNPKDYNNENP
FPFVLAAPTGRAAKRMKESTGLPAVTIHRLLGWNGSDVQRDEDNPISGRLLIVDEMSMVDIWLANQLFKALPNDMQVILV
GDEDQLPSVGPGQVLKDLLASSVIPVTRLESIFRQEDGSSIIQLAHAIKNGQLPPDIRKPQGDRSFFSCSTNQVADVIRQ
VVTNARQKGFPARDIQVLAPMYRGSAGIDSLNVLLQGILNDNRDKKKRELTFGDVVYRVGDKVLQLVNQPENGIYNGDMG
EIIAIIYAKENEDKQDQIFVSFDGIEAKYTRQELNQITHAYCCSIHKSQGSEFPIVILPVVKSYHRMLRRNLIYTAITRS
KQFLIVCGEEEALRYGVGRSGEEERRTTLLEKLQEGFRDKELISKPENPVTENESSNEDGLTYEQKIFQTDPMIGMENIT
PYDFMIRG

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=390919 F7984_RS14145 WP_225983612.1 2942015..2944441(-) (recD2) [Pradoshia sp. D12]
GTGGAACAAGAGTCGTTCGTCTTCTCCGACAATGACAAACCTTTCATCAAAGGAACACATTTGGTTACCATTTTTCATAA
TGAACAAAATTTATACTCGGTTGTACGAATCAGAGTGAAAGAAACGAATTTGAATTACGATGAAAAAGAAGCTGTTATTA
CCGGGTATTTCCCCCCTATTCATGAGGAAGAAATATACACGTTTTATGGGAAAATGAAAGAACATCCCCGTTTTGGGATT
CAATTTCATGTAGATACCTTCCAGCGTGAAGTTCCTGAATCAAAGGAGGGTGTGATTGCTTATTTATCCGGATCTCTTTT
TAAAGGGATTGGTAAAAAGATTGCAGAATCGATTGTCGAAAAACTTGGCGAAAAGGCAATCTCCAAAATTTTAGCGAATC
CATCATTGCTCGATCAAATTCCTAAGCTAAGCGGTGAAAAGGCAAAGCAATTGTATGATACTCTGGCAGCCAATCAGGGC
CTGGAGCAAATCATGATTAATTTATCCAGCCTGGGGTTTGGACCTCAGCTGTCGATGAAAATTTATCAGGCTTATAAAGA
GGACACGATTTCCATCATTGAGCAAAATCCATACCAGCTAGTCGAAACGATTGAGGGAATTGGATTTACTCGCGCAGATG
AAATCGGACTGCAGCTCGGCATTGGAGGAAGCCATCCATCCAGGATTAAGGCAGCGATTCTCTATACACTTGACAGATCT
TGTGTACAGGACGGGCATTCGTATACCGAGGCTGAGGAACTGTTGATCAGCGTAAAAACTCTCTTGGAACAAAATCAAAA
TGTGACCATCACTTTTGAGCAAATTACGGAATCACTTATCCAACTCGGTGAAGAGGGAAAAATCATTGGAGAAGAGAAAA
GGTTTTATATGCCGTCCCTCTACTTTTCTGAAAAAGGGATTGTAACGAATATTAAACGGATTATGTCTCAGGACTCATAT
GCCGATCAATTTCCTGAATCTGAATTTTTATTGGAGCTAGGCAAACTAGAAGAGCGAATTGGGATGGAGTACGCTGAGGA
GCAAAAGGATGCAATCTTTAAAGCCTTACATTCTCCGATGCTGATCCTGACAGGAGGTCCTGGTACCGGTAAAACAACCG
TTATTAAAGGAATCGTTGAATTATATTCAGAATTACATGGTTTGTCCCTTAATCCAAAAGATTATAATAATGAAAATCCA
TTTCCATTTGTTTTAGCAGCTCCAACAGGACGCGCGGCAAAAAGGATGAAGGAATCCACAGGGCTTCCCGCCGTAACTAT
CCACCGTTTATTGGGCTGGAATGGGTCGGATGTTCAGCGTGATGAAGATAATCCAATCAGCGGAAGGCTTTTAATTGTAG
ATGAGATGTCTATGGTAGACATTTGGCTGGCCAATCAGCTTTTTAAAGCATTGCCGAATGATATGCAAGTCATCCTCGTT
GGTGATGAGGATCAGTTGCCTTCAGTTGGACCAGGTCAGGTATTGAAGGATTTACTTGCCTCTTCCGTTATTCCTGTAAC
CCGTCTGGAATCGATATTCAGACAGGAAGATGGTTCTTCCATTATTCAGCTCGCGCATGCGATAAAAAACGGACAGCTGC
CGCCAGATATTCGGAAACCGCAGGGCGATCGTTCATTTTTCTCTTGTTCCACTAATCAAGTAGCAGATGTGATTAGGCAG
GTTGTAACCAATGCCCGCCAAAAAGGGTTCCCAGCCCGTGATATTCAGGTTTTGGCTCCAATGTACAGAGGGAGTGCCGG
AATTGATTCCCTCAATGTCCTCCTGCAGGGCATTCTTAATGATAATCGCGATAAGAAGAAAAGGGAATTGACTTTTGGGG
ATGTGGTTTATCGGGTTGGAGATAAGGTTCTCCAATTAGTGAATCAGCCTGAAAATGGGATTTACAATGGTGATATGGGT
GAAATTATTGCGATTATCTATGCAAAGGAAAATGAAGATAAGCAGGATCAGATTTTTGTTTCATTTGATGGCATTGAAGC
GAAGTATACACGCCAGGAGCTCAATCAAATAACTCATGCTTATTGTTGTTCCATTCATAAATCCCAGGGAAGTGAATTCC
CAATCGTCATATTGCCAGTTGTTAAGAGCTATCACCGCATGCTAAGGAGGAACTTAATTTACACGGCTATAACAAGGAGC
AAACAGTTCCTGATTGTATGCGGTGAAGAGGAAGCCTTACGATACGGCGTCGGTCGCAGTGGTGAGGAGGAACGGCGAAC
AACTCTACTTGAAAAACTGCAGGAAGGGTTCCGTGATAAGGAACTTATCTCCAAACCTGAAAATCCAGTTACTGAAAATG
AAAGTTCCAATGAAGACGGCTTGACGTATGAGCAAAAAATATTCCAAACAGATCCAATGATTGGGATGGAAAACATTACG
CCTTATGATTTTATGATACGCGGTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

AAA domain (AAA_30)

(344-538)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.55

100

0.576

Multiple sequence alignment