Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   F7984_RS13215 Genome accession   NZ_CP044545
Coordinates   2761957..2763669 (-) Length   570 a.a.
NCBI ID   WP_066104921.1    Uniprot ID   A0A1B9AQX7
Organism   Pradoshia sp. D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2756957..2768669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7984_RS13190 (F7984_13190) - 2757070..2757372 (-) 303 WP_066104914.1 hypothetical protein -
  F7984_RS13195 (F7984_13195) - 2757372..2757602 (-) 231 WP_139063837.1 helix-turn-helix transcriptional regulator -
  F7984_RS13200 (F7984_13200) - 2758258..2758983 (-) 726 WP_140462039.1 glycerophosphodiester phosphodiesterase -
  F7984_RS13205 (F7984_13205) spo0A 2759437..2760228 (-) 792 WP_066104919.1 sporulation transcription factor Spo0A -
  F7984_RS13210 (F7984_13210) spoIVB 2760488..2761774 (-) 1287 WP_066104920.1 SpoIVB peptidase -
  F7984_RS13215 (F7984_13215) recN 2761957..2763669 (-) 1713 WP_066104921.1 DNA repair protein RecN Machinery gene
  F7984_RS13220 (F7984_13220) ahrC 2763687..2764136 (-) 450 WP_066104923.1 transcriptional regulator AhrC/ArgR -
  F7984_RS13225 (F7984_13225) - 2764281..2765117 (-) 837 WP_066104926.1 TlyA family RNA methyltransferase -
  F7984_RS13230 (F7984_13230) dxs 2765120..2767015 (-) 1896 WP_140462038.1 1-deoxy-D-xylulose-5-phosphate synthase -
  F7984_RS13235 (F7984_13235) - 2767021..2767635 (-) 615 WP_066104932.1 hypothetical protein -
  F7984_RS19130 - 2768122..2768283 (-) 162 WP_192796811.1 hypothetical protein -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 65076.79 Da        Isoelectric Point: 4.9265

>NTDB_id=390915 F7984_RS13215 WP_066104921.1 2761957..2763669(-) (recN) [Pradoshia sp. D12]
MLLELSIRNFAIIESQTLSLDKGLTVLTGETGAGKSIIIDAVQLLAGGRGSSEFIRHGEEKAELEGLFQLPDSLHPAIEK
AKEFGIESEDNIIIIRRDMYTSGKSVCRINGKMVTISTLREVGRKLIDIHGQHEHQELMDPDFHLPLLDQFGEQDIKQSL
TEYRKLYKQYNETRQQMKKLSENEQKMAHRLDLIQFQFDEIQKAELEIDEEEQLMEEKHKLSNFEKVHQSLHNSYMSLNN
ENGGLDWVGNAMTDLQGIEHIDEQYKELSESVKNAFYILEDVTSSIRSQLDLLEFDPERLHDIDARLNEINHLKRKYGKT
IKEILEYAATIEEEIDTILNRETHLEKLKTQLSALEKEVILEGTNLSELRQKYAHLLTDAIHRELKELYMDKAVFEVYFH
HSGQDQSNLIGENGIDQVEFYISANPGEPVKPLSKTASGGELSRIMLAIKNIFSQHQGITSIIFDEVDTGVSGRVAQAIA
EKIYRVSEGSQVLCISHLPQVAAMADIHLFISKEITEGRTKTNVKPLEKEERVIEIGRMISGKELTALTEEHVKEMLNQA
DQIKYNIKTN

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=390915 F7984_RS13215 WP_066104921.1 2761957..2763669(-) (recN) [Pradoshia sp. D12]
ATGTTATTGGAACTCTCCATTCGTAATTTCGCCATCATTGAATCACAAACGCTCTCCCTCGATAAAGGTTTGACTGTACT
TACTGGTGAAACAGGTGCCGGTAAATCTATAATCATTGATGCAGTACAGCTATTGGCCGGTGGACGAGGATCGTCTGAAT
TCATAAGACATGGTGAAGAAAAAGCTGAACTGGAAGGTTTGTTTCAGTTGCCGGATTCATTACACCCAGCCATAGAGAAA
GCAAAAGAATTTGGGATTGAATCTGAAGACAATATAATTATTATCAGAAGAGATATGTATACCTCAGGGAAAAGTGTGTG
CCGAATCAATGGGAAGATGGTTACAATCTCAACCTTAAGAGAGGTAGGGAGAAAATTAATTGATATTCATGGACAGCATG
AACACCAGGAGTTAATGGATCCCGATTTTCATCTCCCTTTATTGGATCAATTTGGCGAGCAGGATATTAAACAATCTCTG
ACTGAATATCGGAAGCTTTATAAGCAATATAATGAAACCCGTCAGCAAATGAAAAAATTAAGTGAAAATGAGCAGAAAAT
GGCACACAGGCTTGATTTGATACAATTTCAATTTGATGAGATCCAAAAGGCTGAATTGGAGATTGATGAAGAAGAGCAAT
TAATGGAGGAAAAGCATAAACTGAGTAACTTTGAAAAGGTTCACCAAAGTCTACATAATTCCTATATGTCCTTAAATAAT
GAGAATGGCGGACTTGATTGGGTCGGTAATGCGATGACAGACCTACAAGGAATTGAACACATTGATGAACAATATAAAGA
GTTATCTGAATCAGTGAAAAATGCGTTTTATATTCTTGAGGATGTAACAAGCTCGATTCGTTCCCAATTGGATTTATTGG
AGTTTGATCCTGAAAGACTTCATGATATTGATGCAAGACTTAATGAAATTAATCATTTGAAGCGGAAATATGGTAAGACG
ATCAAGGAAATTCTGGAGTATGCTGCAACCATTGAGGAAGAGATTGATACGATATTGAATCGCGAAACACATCTTGAAAA
ATTAAAAACCCAGCTATCAGCTTTAGAGAAAGAAGTAATCCTAGAGGGCACAAATCTGTCAGAGCTGAGACAAAAATATG
CACATCTTCTAACGGACGCAATCCACCGTGAACTTAAAGAGCTGTACATGGATAAAGCCGTATTTGAAGTGTATTTTCAT
CATTCTGGACAAGATCAATCCAATCTTATTGGTGAGAACGGGATAGATCAGGTGGAATTTTATATTTCTGCTAACCCTGG
CGAGCCTGTAAAGCCGCTATCCAAAACAGCCTCCGGTGGAGAACTTTCACGTATTATGCTGGCTATCAAAAATATCTTCT
CTCAACACCAGGGAATCACATCGATTATCTTCGACGAAGTAGATACAGGAGTCAGCGGACGGGTTGCACAGGCAATAGCC
GAAAAGATATACCGTGTGTCGGAAGGCTCGCAGGTATTATGTATCAGTCACTTGCCGCAGGTAGCAGCTATGGCAGACAT
TCATTTATTTATCTCTAAGGAAATTACAGAAGGCCGTACAAAAACGAATGTCAAACCGCTTGAAAAAGAGGAACGAGTAA
TAGAGATTGGCCGAATGATTTCCGGTAAAGAATTAACAGCTTTAACAGAAGAGCATGTAAAAGAAATGCTGAATCAGGCT
GATCAAATTAAATACAATATAAAGACAAACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9AQX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.105

100

0.605

Multiple sequence alignment