Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NMBNZ0533_RS01870 Genome accession   NC_017518
Coordinates   349784..350752 (-) Length   322 a.a.
NCBI ID   WP_014580913.1    Uniprot ID   -
Organism   Neisseria meningitidis NZ-05/33     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344784..355752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBNZ0533_RS01850 (NMBNZ0533_0328) - 346910..347248 (+) 339 WP_002214902.1 P-II family nitrogen regulator -
  NMBNZ0533_RS01855 (NMBNZ0533_0329) - 347307..348065 (-) 759 WP_002240816.1 ABC transporter ATP-binding protein -
  NMBNZ0533_RS01860 (NMBNZ0533_0330) - 348149..348775 (-) 627 WP_014580911.1 FmdE family protein -
  NMBNZ0533_RS01865 (NMBNZ0533_0331) - 348820..349794 (-) 975 WP_014580912.1 iron chelate uptake ABC transporter family permease subunit -
  NMBNZ0533_RS01870 (NMBNZ0533_0332) ceuB 349784..350752 (-) 969 WP_014580913.1 ABC transporter permease Machinery gene
  NMBNZ0533_RS01875 - 350787..350963 (-) 177 WP_162051242.1 hypothetical protein -
  NMBNZ0533_RS01880 (NMBNZ0533_0333) - 350981..351946 (-) 966 WP_014580914.1 siderophore ABC transporter substrate-binding protein -
  NMBNZ0533_RS01885 (NMBNZ0533_0334) fetA 352250..354394 (-) 2145 WP_002224138.1 TonB-dependent siderophore receptor FetA/FrpB -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34413.68 Da        Isoelectric Point: 10.0891

>NTDB_id=39091 NMBNZ0533_RS01870 WP_014580913.1 349784..350752(-) (ceuB) [Neisseria meningitidis NZ-05/33]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMMLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFVGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=39091 NMBNZ0533_RS01870 WP_014580913.1 349784..350752(-) (ceuB) [Neisseria meningitidis NZ-05/33]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAGCAGGTTATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGTAACCGTTTTGTC
GAGCCTTCTATGGCGGGCGCGGGTCAGAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGTTAATCGGGATGTTGGTGTTTATGATGCTTATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCTTTGGTCGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCCACCTTTATTGCGTAT
GAAAACGAAATGCTGCAAATGCTGGGCGTGTGGCAACAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTGGCTTTGATTACGTCGCTGGTTATC
GTTACGGTCGGCAATATTCCGTTTGTCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCCTTGTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTATCGACCGTCTTCGGCGTATTGGGTACGGCGTTGTTTTTATGGCTTTTGTTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388

Multiple sequence alignment