Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F7984_RS00500 Genome accession   NZ_CP044545
Coordinates   94250..95629 (+) Length   459 a.a.
NCBI ID   WP_066103066.1    Uniprot ID   A0A1B9AXH9
Organism   Pradoshia sp. D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89250..100629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7984_RS00480 (F7984_00480) - 89532..89993 (+) 462 WP_066103078.1 CtsR family transcriptional regulator -
  F7984_RS00485 (F7984_00485) - 90018..90551 (+) 534 WP_140462334.1 UvrB/UvrC motif-containing protein -
  F7984_RS00490 (F7984_00490) - 90548..91627 (+) 1080 WP_066103072.1 protein arginine kinase -
  F7984_RS00495 (F7984_00495) clpC 91640..94081 (+) 2442 WP_066103069.1 ATP-dependent protease ATP-binding subunit ClpC -
  F7984_RS00500 (F7984_00500) radA 94250..95629 (+) 1380 WP_066103066.1 DNA repair protein RadA Machinery gene
  F7984_RS00505 (F7984_00505) disA 95634..96704 (+) 1071 WP_066103063.1 DNA integrity scanning diadenylate cyclase DisA -
  F7984_RS00510 (F7984_00510) - 96900..97994 (+) 1095 WP_066103060.1 PIN/TRAM domain-containing protein -
  F7984_RS00515 (F7984_00515) ispD 98028..98729 (+) 702 WP_140462333.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  F7984_RS00520 (F7984_00520) ispF 98722..99198 (+) 477 WP_066103055.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50026.48 Da        Isoelectric Point: 6.6959

>NTDB_id=390897 F7984_RS00500 WP_066103066.1 94250..95629(+) (radA) [Pradoshia sp. D12]
MAKKKTKFICQSCGYESAKWMGKCPGCNEWNTMTEEIEITANKNQRRTAFTHSDQAMAKPTSITSIGTEQEPRVLTDSNE
LNRVLGGGIVPGSLLLIGGDPGIGKSTLLLQVSSQLANNNYDVLYISGEESVKQTKLRAVRLGVSSDHLYVYSETDMGMI
EQAINEMNPNFVIIDSIQTVFHPDVTSAPGSVSQVRECTAELMRLAKTKGIAIFIVGHVTKEGNIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEEGLEEVLNPSEIFLEERSQGAAGSTVVASMEGTRPILVEIQALISPSI
FPNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVTGGVKLGEPAVDLAVIVSIASGFKDVPTRATDCIVGEVGL
TGEVRRVSRIEQRVKEAAKLGFERIIVPANNLGGWKPPSEIKVIGVNSVSEALKYALGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=390897 F7984_RS00500 WP_066103066.1 94250..95629(+) (radA) [Pradoshia sp. D12]
ATGGCAAAAAAGAAAACGAAATTTATCTGCCAAAGTTGTGGATATGAATCAGCAAAATGGATGGGGAAATGCCCTGGCTG
TAATGAATGGAATACCATGACAGAGGAAATTGAAATAACAGCTAATAAAAATCAGAGACGTACAGCTTTTACCCATTCGG
ATCAGGCAATGGCGAAACCTACATCGATTACTTCCATAGGTACGGAGCAGGAACCTCGCGTATTGACAGATTCAAATGAA
CTCAATCGTGTTCTTGGAGGAGGAATTGTACCTGGGTCCTTATTATTGATAGGTGGAGATCCAGGGATTGGAAAATCTAC
TTTATTACTGCAGGTTTCATCCCAGCTAGCGAATAATAATTACGATGTTTTGTACATATCTGGCGAAGAATCAGTGAAGC
AAACAAAACTGAGGGCTGTTAGACTGGGGGTATCTTCAGACCATCTCTATGTTTATTCTGAAACAGATATGGGGATGATT
GAACAAGCTATCAATGAAATGAACCCTAATTTTGTCATAATCGACTCTATTCAAACAGTATTCCATCCTGATGTAACATC
TGCTCCAGGCAGTGTATCACAGGTTCGTGAATGTACAGCTGAATTAATGAGACTGGCTAAGACAAAGGGAATTGCAATAT
TTATTGTTGGCCATGTTACAAAAGAGGGTAATATTGCCGGACCGAGACTATTGGAACATATGGTGGATACCGTGCTCTAT
TTTGAAGGGGAACGTCATCATACTTATCGTATTTTAAGGGCAGTCAAGAACAGATTTGGTTCTACAAATGAAATGGGTAT
TTTTGAAATGAAGGAAGAAGGATTAGAGGAAGTTTTGAATCCTTCGGAGATATTCCTCGAAGAACGTTCTCAGGGCGCAG
CGGGTTCAACTGTCGTAGCTTCGATGGAAGGAACACGGCCCATACTTGTAGAAATACAAGCCCTCATTTCTCCATCTATC
TTCCCTAATCCAAGAAGGATGGCAACAGGAATTGACCATAATCGTGTCTCTTTGTTAATGGCTGTTCTGGAGAAAAGAGT
TGGTCTCTTACTTCAAAACCAAGATGCATATTTAAAGGTCACCGGTGGAGTAAAGTTGGGTGAGCCTGCTGTAGATTTGG
CTGTAATTGTCAGTATAGCTTCAGGCTTTAAAGACGTACCTACTAGAGCAACGGATTGTATTGTTGGTGAAGTTGGATTA
ACCGGTGAAGTTAGAAGGGTATCGCGGATAGAGCAAAGAGTAAAGGAAGCAGCGAAGCTTGGATTTGAGCGTATTATCGT
GCCTGCCAATAATTTGGGTGGCTGGAAACCTCCGTCAGAAATCAAAGTGATTGGAGTCAATTCGGTAAGCGAAGCTTTAA
AATATGCATTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(369-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9AXH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.124

100

0.771
  radA Streptococcus mitis SK321

63.436

98.911

0.627
  radA Streptococcus mitis NCTC 12261

63.436

98.911

0.627
  radA Streptococcus pneumoniae Rx1

63.216

98.911

0.625
  radA Streptococcus pneumoniae D39

63.216

98.911

0.625
  radA Streptococcus pneumoniae R6

63.216

98.911

0.625
  radA Streptococcus pneumoniae TIGR4

63.216

98.911

0.625

Multiple sequence alignment