Detailed information NTG0390894

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ54_RS03505
• Genome accession: NZ_CP053245
• Coordinates: 763003..763995 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-485
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 758003..768995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ54_RS03485 (HHJ54_03485)	ygbM	758640..759416 (+)	777	WP_001136912.1	HPr family phosphocarrier protein	-
HHJ54_RS03490 (HHJ54_03490)	ygbN	759505..760869 (+)	1365	WP_000104433.1	GntP family transporter	-
HHJ54_RS03495 (HHJ54_03495)	-	761012..762055 (-)	1044	WP_001161584.1	MBL fold metallo-hydrolase	-
HHJ54_RS03500 (HHJ54_03500)	-	762281..762832 (+)	552	WP_001179442.1	flavodoxin family protein	-
HHJ54_RS03505 (HHJ54_03505)	rpoS	763003..763995 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ54_RS03510 (HHJ54_03510)	nlpD	764058..765152 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ54_RS03515 (HHJ54_03515)	pcm	765337..765963 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HHJ54_RS03520 (HHJ54_03520)	surE	765957..766718 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ54_RS03525 (HHJ54_03525)	truD	766699..767748 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
HHJ54_RS03530 (HHJ54_03530)	ispF	767745..768224 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ54_RS03535 (HHJ54_03535)	ispD	768224..768934 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=390894 HHJ54_RS03505 WP_000081550.1 763003..763995(-) (rpoS) [Escherichia coli strain SCU-485]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=390894 HHJ54_RS03505 WP_000081550.1 763003..763995(-) (rpoS) [Escherichia coli strain SCU-485]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715