Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ54_RS03210 Genome accession   NZ_CP053245
Coordinates   707738..708253 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain SCU-485     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 702738..713253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ54_RS03190 (HHJ54_03190) emrA 702886..704058 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HHJ54_RS03195 (HHJ54_03195) emrB 704075..705613 (+) 1539 WP_001337983.1 multidrug efflux MFS transporter permease subunit EmrB -
  HHJ54_RS03200 (HHJ54_03200) - 705871..706578 (+) 708 WP_001097130.1 RNA ligase family protein -
  HHJ54_RS03205 (HHJ54_03205) - 706575..707687 (+) 1113 WP_000638140.1 ATP-binding protein -
  HHJ54_RS03210 (HHJ54_03210) luxS 707738..708253 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  HHJ54_RS03215 (HHJ54_03215) gshA 708403..709959 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HHJ54_RS03220 (HHJ54_03220) yqaA 710032..710460 (-) 429 WP_001287462.1 YqaA family protein -
  HHJ54_RS03225 (HHJ54_03225) yqaB 710457..711023 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HHJ54_RS03255 (HHJ54_03255) csrA 712212..712397 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=390891 HHJ54_RS03210 WP_001130208.1 707738..708253(-) (luxS) [Escherichia coli strain SCU-485]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=390891 HHJ54_RS03210 WP_001130208.1 707738..708253(-) (luxS) [Escherichia coli strain SCU-485]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737