Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ54_RS00235 Genome accession   NZ_CP053245
Coordinates   45488..46915 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-485     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40488..51915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ54_RS00205 (HHJ54_00205) pduU 40865..41215 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  HHJ54_RS00210 (HHJ54_00210) - 41220..41663 (+) 444 WP_001189438.1 EutP/PduV family microcompartment system protein -
  HHJ54_RS00215 (HHJ54_00215) tmaR 41764..42093 (-) 330 WP_000450409.1 DUF496 family protein -
  HHJ54_RS00220 (HHJ54_00220) yeeA 42265..43323 (-) 1059 WP_001200890.1 FUSC family protein -
  HHJ54_RS00225 (HHJ54_00225) sbmC 43521..43994 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HHJ54_RS00230 (HHJ54_00230) dacD 44113..45279 (-) 1167 WP_001580744.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ54_RS00235 (HHJ54_00235) sbcB 45488..46915 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  HHJ54_RS00240 (HHJ54_00240) plaP 46989..48347 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ54_RS00245 (HHJ54_00245) yoeI 48337..48399 (-) 63 WP_010723108.1 membrane protein YoeI -
  HHJ54_RS00250 (HHJ54_00250) yeeY 48614..49543 (-) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  HHJ54_RS00255 (HHJ54_00255) yeeZ 49589..50413 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  HHJ54_RS00260 (HHJ54_00260) yoeB 50496..50750 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HHJ54_RS00265 (HHJ54_00265) yefM 50747..50998 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HHJ54_RS00270 (HHJ54_00270) hisL 51281..51331 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=390881 HHJ54_RS00235 WP_000980557.1 45488..46915(+) (sbcB) [Escherichia coli strain SCU-485]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=390881 HHJ54_RS00235 WP_000980557.1 45488..46915(+) (sbcB) [Escherichia coli strain SCU-485]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAATGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583