Detailed information NTG0390865

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ24_RS18705
• Genome accession: NZ_CP053234
• Coordinates: 3863469..3864461 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-106
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3858469..3869461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ24_RS18675 (HHJ24_18680)	ispD	3858530..3859240 (+)	711	WP_045171841.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HHJ24_RS18680 (HHJ24_18685)	ispF	3859240..3859719 (+)	480	WP_170969486.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ24_RS18685 (HHJ24_18690)	truD	3859716..3860765 (+)	1050	WP_170969487.1	tRNA pseudouridine(13) synthase TruD	-
HHJ24_RS18690 (HHJ24_18695)	surE	3860746..3861507 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ24_RS18695 (HHJ24_18700)	pcm	3861501..3862127 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HHJ24_RS18700 (HHJ24_18705)	nlpD	3862312..3863406 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ24_RS18705 (HHJ24_18710)	rpoS	3863469..3864461 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ24_RS18710 (HHJ24_18715)	-	3864581..3864988 (-)	408	WP_001208062.1	MarR family transcriptional regulator	-
HHJ24_RS18715 (HHJ24_18720)	-	3865135..3865728 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HHJ24_RS18720 (HHJ24_18725)	-	3865728..3867155 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HHJ24_RS18725 (HHJ24_18730)	-	3867166..3867402 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HHJ24_RS18730 (HHJ24_18735)	ygbN	3867441..3868805 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=390865 HHJ24_RS18705 WP_000081550.1 3863469..3864461(+) (rpoS) [Escherichia coli strain SCU-106]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=390865 HHJ24_RS18705 WP_000081550.1 3863469..3864461(+) (rpoS) [Escherichia coli strain SCU-106]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715