Detailed information NTG0390790

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: F7R60_RS08940
• Genome accession: NZ_CP044519
• Coordinates: 1864516..1865217 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain 29FS20
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1859516..1870217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7R60_RS08905 (F7R60_09040)	kdsB	1860039..1860800 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
F7R60_RS08910 (F7R60_09045)	-	1860812..1861792 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
F7R60_RS08915 (F7R60_09050)	-	1861804..1862145 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
F7R60_RS08920 (F7R60_09055)	-	1862163..1862936 (+)	774	WP_000497298.1	TatD family hydrolase	-
F7R60_RS08925 (F7R60_09060)	-	1862974..1863582 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
F7R60_RS08930 (F7R60_09065)	-	1863592..1864146 (+)	555	WP_000841373.1	type II secretion system protein	-
F7R60_RS08935 (F7R60_09070)	xcpV	1864136..1864516 (+)	381	WP_000836907.1	type II secretion system minor pseudopilin GspI	Machinery gene
F7R60_RS08940 (F7R60_09075)	xcpW	1864516..1865217 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
F7R60_RS08945 (F7R60_09080)	gspK	1865217..1866176 (+)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
F7R60_RS08950 (F7R60_09085)	-	1866406..1867002 (+)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
F7R60_RS08955 (F7R60_09090)	ung	1867053..1867766 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
F7R60_RS08960 (F7R60_09095)	-	1867763..1868887 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
F7R60_RS08965 (F7R60_09100)	tadA	1868894..1869397 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
F7R60_RS08970 (F7R60_09105)	-	1869467..1869910 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=390790 F7R60_RS08940 WP_000594572.1 1864516..1865217(+) (xcpW) [Acinetobacter baumannii strain 29FS20]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=390790 F7R60_RS08940 WP_000594572.1 1864516..1865217(+) (xcpW) [Acinetobacter baumannii strain 29FS20]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991