Detailed information NTG0390740

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ44_RS10225
• Genome accession: NZ_CP053231
• Coordinates: 2089215..2090207 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-306
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2084215..2095207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ44_RS10205 (HHJ44_10200)	ygbM	2084846..2085622 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
HHJ44_RS10210 (HHJ44_10205)	ygbN	2085711..2087075 (+)	1365	WP_000104443.1	GntP family transporter	-
HHJ44_RS10215 (HHJ44_10210)	-	2087218..2088261 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
HHJ44_RS10220 (HHJ44_10215)	-	2088486..2089037 (+)	552	WP_001179442.1	flavodoxin family protein	-
HHJ44_RS10225 (HHJ44_10220)	rpoS	2089215..2090207 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ44_RS10230 (HHJ44_10225)	nlpD	2090270..2091364 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ44_RS10235 (HHJ44_10230)	pcm	2091549..2092175 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HHJ44_RS10240 (HHJ44_10235)	surE	2092169..2092930 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ44_RS10245 (HHJ44_10240)	truD	2092911..2093960 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
HHJ44_RS10250 (HHJ44_10245)	ispF	2093957..2094436 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ44_RS10255 (HHJ44_10250)	ispD	2094436..2095146 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=390740 HHJ44_RS10225 WP_000081550.1 2089215..2090207(-) (rpoS) [Escherichia coli strain SCU-306]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=390740 HHJ44_RS10225 WP_000081550.1 2089215..2090207(-) (rpoS) [Escherichia coli strain SCU-306]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715