Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F7R58_RS10515 Genome accession   NZ_CP044507
Coordinates   2232485..2233831 (+) Length   448 a.a.
NCBI ID   WP_158064877.1    Uniprot ID   A0A5P5ZR86
Organism   Chryseobacterium sp. strain SNU WT7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2227485..2238831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R58_RS10500 (F7R58_10500) yidC 2227767..2229563 (-) 1797 WP_158064874.1 membrane protein insertase YidC -
  F7R58_RS10505 (F7R58_10505) - 2229717..2231321 (-) 1605 WP_158064875.1 CTP synthase -
  F7R58_RS10510 (F7R58_10510) - 2231579..2232382 (+) 804 WP_187695232.1 phosphatase PAP2 family protein -
  F7R58_RS10515 (F7R58_10515) radA 2232485..2233831 (+) 1347 WP_158064877.1 DNA repair protein RadA Machinery gene
  F7R58_RS10520 (F7R58_10520) - 2233904..2234095 (+) 192 WP_158064878.1 hypothetical protein -
  F7R58_RS10525 (F7R58_10525) - 2234273..2235439 (+) 1167 WP_187695233.1 zinc-dependent metalloprotease -
  F7R58_RS10530 (F7R58_10530) - 2235534..2236112 (+) 579 WP_158064880.1 ACP phosphodiesterase -
  F7R58_RS10535 (F7R58_10535) - 2236109..2236609 (-) 501 WP_158064881.1 DUF6702 family protein -
  F7R58_RS10540 (F7R58_10540) - 2236663..2237241 (+) 579 WP_158064882.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49485.88 Da        Isoelectric Point: 6.1961

>NTDB_id=390702 F7R58_RS10515 WP_158064877.1 2232485..2233831(+) (radA) [Chryseobacterium sp. strain SNU WT7]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNTLVEEIVEKSPARTTGSKSKQHIINIIEVETSEEPRITTPSEELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCYLFTETSVEKILHEAKKLQ
PDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKFAKDSNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMVAQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLIEIQALVSSAVYGTPQRSC
TGYDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDSAISEHFCFAGEIGLSGEIRPVA
QIEQRISEAEKLGYEQIFVSKLNKLPKRKSGIIVEEVSKVEEFHDRLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=390702 F7R58_RS10515 WP_158064877.1 2232485..2233831(+) (radA) [Chryseobacterium sp. strain SNU WT7]
ATGGCAAAACTCAAAACTGCATATTTCTGTCAGAATTGCGGAACTCAGTATCCTCAATGGTTAGGACAATGCAAGAATTG
TGGCGAATGGAATACCCTTGTGGAGGAAATAGTAGAAAAATCTCCGGCCAGGACCACAGGCAGCAAATCCAAACAGCATA
TCATCAACATCATTGAAGTTGAGACCAGTGAGGAACCGCGCATTACAACACCTTCCGAGGAACTGAACCGCGTACTGGGC
GGCGGTATCGTGCTGGGCTCAGTGACCCTCATAGGTGGCGAACCGGGGATTGGCAAATCCACGCTTCTACTGCAGCTTGC
CCTGAAGATGAAGAAAAAGATTCTTTATGTGTCCGGCGAGGAGAGTGCGTCACAGATTAAAATGCGGGCCGACAGGCTTA
CAGAACTTCAGAACCCGAACTGCTACCTTTTCACCGAAACGTCAGTGGAAAAAATCCTGCACGAAGCAAAAAAACTGCAG
CCCGATTTTGTAATTATCGACTCCATACAGACGCTGCAAAGCCAGCTTATTGAAAGTTCGCCCGGCACGGTTTCACAGAT
ACGGGAATGCTCCAATGAGATTATTAAATTTGCCAAAGACAGCAATACACCTGTTTTTCTGGTAGGCCACATCACCAAAG
ACGGTCAGATTGCAGGGCCCAAGGTGCTGGAACATATGGTAGATGTAGTACTTAATTTTGACGGAGACCGCAACCATCTT
TTCCGCCTTTTGCGTGCCAATAAAAACCGTTTCGGATCTACGTCAGAAATTGGAATTTACGAAATGGTGGCGCAGGGACT
TAAGGAAATAAAAAACCCTTCAGAAATACTGATTACAAAAAAGTTTGAGGAACTCTCGGGCAATTCGGTAGCCGTTACGC
TGGAAGGCAACCGGCCGATGCTTATCGAGATTCAGGCTCTTGTAAGTTCTGCGGTATACGGAACACCGCAAAGAAGCTGT
ACAGGATATGATTCCAAGCGTCTGAATATGCTGCTGGCAGTTTTGGAAAAACGTGCCGGGTTTCAGTTGGGAGCCAAAGA
TGTATTCCTGAACATCACCGGAGGCATCAAAACCGACGATCCGGCGCTGGACCTGGCCGTAGTAGCGTCTATACTTTCAA
GCAATGAGGACAGCGCGATTTCGGAACACTTCTGCTTCGCCGGTGAAATTGGTCTGAGTGGCGAAATCCGTCCGGTAGCA
CAGATTGAGCAGCGTATTTCTGAAGCCGAAAAGCTGGGCTATGAACAAATATTTGTTTCCAAACTGAACAAACTTCCCAA
AAGAAAGTCCGGGATTATTGTAGAGGAGGTTAGCAAGGTGGAAGAATTTCATGACCGTCTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-216)

Subunit ChlI of Mg-chelatase (ChlI)

(337-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P5ZR86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.465

100

0.493
  radA Streptococcus pneumoniae Rx1

48.465

100

0.493
  radA Streptococcus pneumoniae D39

48.465

100

0.493
  radA Streptococcus pneumoniae TIGR4

48.465

100

0.493
  radA Bacillus subtilis subsp. subtilis str. 168

50.812

96.205

0.489
  radA Streptococcus mitis NCTC 12261

50.118

94.866

0.475
  radA Streptococcus mitis SK321

50.118

94.866

0.475

Multiple sequence alignment