Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   F7R58_RS00155 Genome accession   NZ_CP044507
Coordinates   25454..26566 (-) Length   370 a.a.
NCBI ID   WP_158063004.1    Uniprot ID   -
Organism   Chryseobacterium sp. strain SNU WT7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 20454..31566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R58_RS00135 (F7R58_00135) - 21701..22078 (+) 378 WP_158063000.1 DUF3127 domain-containing protein -
  F7R58_RS00140 (F7R58_00140) aat 22134..22784 (+) 651 WP_158063001.1 leucyl/phenylalanyl-tRNA--protein transferase -
  F7R58_RS00145 (F7R58_00145) - 22774..23655 (+) 882 WP_158063002.1 DMT family transporter -
  F7R58_RS00150 (F7R58_00150) gdhA 23912..25270 (-) 1359 WP_158063003.1 NADP-specific glutamate dehydrogenase -
  F7R58_RS00155 (F7R58_00155) dprA 25454..26566 (-) 1113 WP_158063004.1 DNA-processing protein DprA Machinery gene
  F7R58_RS00160 (F7R58_00160) - 26598..27371 (-) 774 WP_158063005.1 rhomboid family intramembrane serine protease -
  F7R58_RS00165 (F7R58_00165) - 27533..28648 (+) 1116 WP_158063006.1 DUF3078 domain-containing protein -
  F7R58_RS00170 (F7R58_00170) sufD 28722..30029 (-) 1308 WP_158063007.1 Fe-S cluster assembly protein SufD -
  F7R58_RS00175 (F7R58_00175) sufC 30048..30791 (-) 744 WP_158063008.1 Fe-S cluster assembly ATPase SufC -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 41251.09 Da        Isoelectric Point: 7.5546

>NTDB_id=390690 F7R58_RS00155 WP_158063004.1 25454..26566(-) (dprA) [Chryseobacterium sp. strain SNU WT7]
MFADEHLYSIALRKCSNIGDINFYKLVNAVGSAREVWSFPKRELAKILGIGNRTLHEIGSGEALQFAEKELKFCESHSIH
IRLRHRAELPALLNECEDAPAILYQKGNLQPYRKSFSMVGTRNMTSYGKGFVHDFFQHIRKSGIISVSGLALGVDTEVHE
QSLKEQIPTVAVLAHGFHTIYPSKNRKLAERILEHNGVLLSEFNSSQKPDRENFIQRNRIVAGLSEATIVVETAFGGGSV
STVGFANTYNREVYALPGKINDKYSQGCNMVIAQNKARIISTVTDLVEELGLDDQSGLMEPLFPKSELRRQMTEDQKIIY
NIIVENPYISLDEIAGKTSSASHKILSQLLELELSGLIKALSGRQYTANP

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=390690 F7R58_RS00155 WP_158063004.1 25454..26566(-) (dprA) [Chryseobacterium sp. strain SNU WT7]
ATGTTTGCGGACGAACATCTGTATTCTATTGCTTTGCGCAAATGCAGTAATATAGGAGATATTAACTTCTATAAACTTGT
CAATGCAGTTGGGTCTGCCCGGGAAGTCTGGAGTTTCCCAAAGCGGGAACTGGCTAAGATTTTAGGTATCGGTAACAGGA
CACTGCACGAAATAGGTTCCGGCGAAGCGCTGCAGTTTGCAGAAAAGGAGCTGAAATTCTGCGAAAGTCACAGCATACAC
ATCAGACTAAGGCACCGGGCAGAATTACCTGCTCTGCTTAACGAGTGTGAAGATGCGCCGGCAATACTATATCAGAAGGG
AAATCTGCAACCATACCGCAAGTCCTTTTCAATGGTAGGAACGAGAAACATGACGTCTTACGGCAAAGGGTTTGTTCACG
ATTTCTTCCAGCACATCCGGAAATCAGGAATTATCTCTGTAAGCGGCCTGGCTTTAGGTGTGGATACAGAGGTGCATGAG
CAGTCGCTGAAGGAACAGATTCCTACCGTTGCTGTGCTGGCACATGGTTTCCACACCATCTATCCATCCAAAAACCGGAA
ACTGGCAGAGCGGATTTTGGAGCATAATGGAGTATTGCTTTCAGAATTTAACTCATCACAAAAACCCGACCGGGAAAATT
TCATTCAGAGAAACCGCATCGTTGCGGGCTTGTCCGAAGCTACCATTGTTGTGGAAACGGCTTTTGGCGGCGGCTCGGTA
AGTACTGTCGGTTTTGCGAACACCTATAACCGGGAGGTCTATGCGCTTCCCGGAAAGATAAACGATAAGTACAGTCAGGG
TTGCAATATGGTCATTGCACAAAACAAAGCCCGTATAATTAGTACAGTTACAGATTTGGTGGAAGAATTGGGTCTGGATG
ACCAATCGGGTCTTATGGAGCCACTTTTTCCTAAATCTGAATTGAGACGACAAATGACTGAAGATCAAAAGATCATCTAT
AATATCATAGTGGAAAACCCTTATATCTCTCTGGATGAGATAGCAGGAAAAACCTCCTCGGCATCGCATAAGATTTTAAG
TCAACTCCTTGAACTTGAACTTAGCGGCTTAATTAAAGCACTTTCAGGGAGGCAATATACAGCAAATCCCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-363)

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.699

98.649

0.53

Multiple sequence alignment