Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HLG77_RS10310 Genome accession   NZ_CP053218
Coordinates   2127603..2128238 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain DT01139C     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2122603..2133238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG77_RS10285 (HLG77_10290) - 2122659..2123639 (-) 981 WP_001075420.1 DNA polymerase III subunit delta' -
  HLG77_RS10290 (HLG77_10295) kdsB 2123651..2124412 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HLG77_RS10295 (HLG77_10300) lpxK 2124422..2125432 (-) 1011 WP_000050468.1 tetraacyldisaccharide 4'-kinase -
  HLG77_RS10300 (HLG77_10305) msbA 2125435..2127162 (-) 1728 WP_001070735.1 lipid A export permease/ATP-binding protein MsbA -
  HLG77_RS10305 (HLG77_10310) - 2127159..2127587 (-) 429 WP_000669685.1 ExbD/TolR family protein -
  HLG77_RS10310 (HLG77_10315) exbB 2127603..2128238 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HLG77_RS10315 (HLG77_10320) - 2128288..2129175 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  HLG77_RS10320 (HLG77_10325) - 2129172..2129954 (-) 783 WP_000057212.1 ParA family protein -
  HLG77_RS10325 (HLG77_10330) rsmG 2129976..2130608 (-) 633 WP_000553190.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HLG77_RS10330 (HLG77_10335) murU 2130696..2131385 (-) 690 WP_000646466.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  HLG77_RS10335 (HLG77_10340) - 2131385..2132398 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=390680 HLG77_RS10310 WP_000264037.1 2127603..2128238(-) (exbB) [Acinetobacter baumannii strain DT01139C]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=390680 HLG77_RS10310 WP_000264037.1 2127603..2128238(-) (exbB) [Acinetobacter baumannii strain DT01139C]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393