Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HLG77_RS09720 Genome accession   NZ_CP053218
Coordinates   2007766..2008362 (-) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain DT01139C     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2002766..2013362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG77_RS09685 (HLG77_09690) - 2003050..2003310 (-) 261 WP_188146221.1 YcgL domain-containing protein -
  HLG77_RS09690 (HLG77_09695) - 2003798..2003962 (+) 165 WP_000086293.1 hypothetical protein -
  HLG77_RS09695 (HLG77_09700) - 2004034..2004375 (-) 342 WP_000367436.1 hypothetical protein -
  HLG77_RS09700 (HLG77_09705) - 2004506..2004772 (-) 267 WP_000183704.1 hypothetical protein -
  HLG77_RS09705 (HLG77_09710) - 2005275..2006087 (-) 813 Protein_1890 HRDC domain-containing protein -
  HLG77_RS09710 (HLG77_09715) - 2006080..2007070 (-) 991 Protein_1891 IS3-like element ISAba14 family transposase -
  HLG77_RS09715 (HLG77_09720) - 2007146..2007460 (-) 315 Protein_1892 ribonuclease D -
  HLG77_RS09720 (HLG77_09725) recR 2007766..2008362 (-) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  HLG77_RS09725 (HLG77_09730) - 2008372..2008701 (-) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  HLG77_RS09730 (HLG77_09735) - 2008967..2009203 (-) 237 WP_000917295.1 hypothetical protein -
  HLG77_RS09735 (HLG77_09740) - 2009381..2010568 (-) 1188 WP_001076392.1 O-succinylhomoserine sulfhydrylase -
  HLG77_RS09740 (HLG77_09745) - 2010702..2011787 (+) 1086 WP_000825837.1 alpha/beta fold hydrolase -
  HLG77_RS09745 (HLG77_09750) - 2011868..2012635 (-) 768 WP_000934177.1 class I SAM-dependent methyltransferase -
  HLG77_RS09750 (HLG77_09755) - 2012810..2013184 (-) 375 WP_000800035.1 TonB C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=390675 HLG77_RS09720 WP_000490551.1 2007766..2008362(-) (recR) [Acinetobacter baumannii strain DT01139C]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=390675 HLG77_RS09720 WP_000490551.1 2007766..2008362(-) (recR) [Acinetobacter baumannii strain DT01139C]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGAGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCCCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGGCACCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGTATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCGCAAGGCGTACCACAAGGTGGCGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424