Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   HLG77_RS03060 Genome accession   NZ_CP053218
Coordinates   621742..622257 (-) Length   171 a.a.
NCBI ID   WP_000477150.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DT01139C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 616742..627257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG77_RS03035 (HLG77_03035) - 617289..618932 (+) 1644 WP_000281768.1 nitrite/sulfite reductase -
  HLG77_RS03040 (HLG77_03040) - 618925..619410 (+) 486 WP_000935245.1 DUF934 domain-containing protein -
  HLG77_RS03045 (HLG77_03045) - 619492..619845 (+) 354 WP_000457784.1 DMT family transporter -
  HLG77_RS03050 (HLG77_03050) - 619888..620331 (-) 444 WP_001176580.1 VOC family protein -
  HLG77_RS03055 (HLG77_03055) - 620458..621633 (-) 1176 WP_000129973.1 thiolase family protein -
  HLG77_RS03060 (HLG77_03060) fimT 621742..622257 (-) 516 WP_000477150.1 GspH/FimT family pseudopilin Machinery gene
  HLG77_RS03065 (HLG77_03065) omp38 622639..623691 (+) 1053 WP_002124338.1 outer membrane protein Omp38 -
  HLG77_RS03070 (HLG77_03070) - 623813..623971 (-) 159 WP_000692859.1 hypothetical protein -
  HLG77_RS03075 (HLG77_03075) - 623975..625180 (-) 1206 WP_000512703.1 RtcB family protein -
  HLG77_RS03080 (HLG77_03080) - 625457..626917 (-) 1461 WP_000004972.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19640.87 Da        Isoelectric Point: 8.8196

>NTDB_id=390657 HLG77_RS03060 WP_000477150.1 621742..622257(-) (fimT) [Acinetobacter baumannii strain DT01139C]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQFKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=390657 HLG77_RS03060 WP_000477150.1 621742..622257(-) (fimT) [Acinetobacter baumannii strain DT01139C]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGTTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427