Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LH506_RS08730 Genome accession   NZ_CP044499
Coordinates   1767519..1769330 (+) Length   603 a.a.
NCBI ID   WP_057756122.1    Uniprot ID   A0A0R2BH87
Organism   Lapidilactobacillus dextrinicus strain LH506     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1762519..1774330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH506_RS08715 (LH506_08715) - 1763651..1765135 (-) 1485 WP_057756112.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  LH506_RS08720 (LH506_08720) - 1765415..1765966 (+) 552 WP_057756114.1 TetR/AcrR family transcriptional regulator -
  LH506_RS08725 (LH506_08725) - 1766201..1767319 (-) 1119 WP_057756118.1 LCP family protein -
  LH506_RS08730 (LH506_08730) pepF 1767519..1769330 (+) 1812 WP_057756122.1 oligoendopeptidase F Regulator
  LH506_RS08735 (LH506_08735) - 1769411..1769590 (+) 180 WP_057756124.1 hypothetical protein -
  LH506_RS08745 (LH506_08745) - 1770157..1770948 (-) 792 WP_057756127.1 metal ABC transporter permease -
  LH506_RS08750 (LH506_08750) - 1770948..1771640 (-) 693 WP_057756130.1 metal ABC transporter ATP-binding protein -
  LH506_RS08755 (LH506_08755) - 1771671..1772570 (-) 900 WP_057756133.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LH506_RS08760 (LH506_08760) - 1772912..1773497 (-) 586 Protein_1688 amino acid racemase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68334.13 Da        Isoelectric Point: 4.4384

>NTDB_id=390627 LH506_RS08730 WP_057756122.1 1767519..1769330(+) (pepF) [Lapidilactobacillus dextrinicus strain LH506]
MSEAKILPTRAEVPEALTWNLELIYPTEQDWENDLKIVKEMTTTVRQFAGKVGQSATNLYDVLVQAHDTFRKLEKLYVYA
SMKSNQDNANNHYQGLLARVSSLAAKIQADIAFMEPEIIAITDEQLTTFVQDEPRLHEYSHYLENLRLKKDHILDAQTEA
LLSGAAEIFDASSQTFSVLSDSDLEFPYVEDENGDTVQLSNGLYGALIESTDRAVRQDAFAALYSVYDQFQNTLAQTLTG
NVKSHNFMATAHHYPNARTAAMAADNIPESVYDTLVEQVNAHLPLLHRYVALRKQLLGVAELHMYDMYVPLTGEPPLNYT
YDEAKVEARKALAVLGEDYLSHVDEIFNNRYIDVVESKGKTSGAYSGGAYDTAPYELLNWQDSVNSLYTLVHETGHSVHS
WYTRHNQPYQYGDYPIFLAEIASTTNENLLTEYLLQTQTDPQVRAYLLNYYLDGFKGTVFRQTQFAEFEHFIHTADAAGE
PLTADVLDDYYGDLNARYYGPAVAEDPEIALEWSRIPHFYYNYYVYQYATGFAAASTLSQLMLTNGQPAVNRYLDFLKSG
SSDYALNTMKKAGLDMTQPDYLEAAFAVFEKRLNELESLIKKD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=390627 LH506_RS08730 WP_057756122.1 1767519..1769330(+) (pepF) [Lapidilactobacillus dextrinicus strain LH506]
ATGAGTGAAGCAAAAATATTACCAACTCGCGCAGAAGTTCCCGAGGCTTTAACTTGGAACCTTGAATTAATCTACCCCAC
TGAACAAGATTGGGAAAACGATCTTAAAATTGTTAAGGAGATGACAACAACTGTCCGCCAGTTTGCCGGCAAAGTTGGCC
AATCTGCAACTAATCTATATGACGTCTTGGTACAAGCTCACGATACTTTTCGCAAATTAGAGAAGCTTTACGTCTATGCT
TCCATGAAAAGTAATCAAGACAATGCTAATAACCACTATCAAGGTCTATTAGCACGCGTTAGTTCCCTAGCCGCTAAAAT
TCAGGCTGATATTGCCTTTATGGAACCAGAAATTATTGCCATCACAGATGAGCAATTGACAACATTCGTGCAGGATGAGC
CACGGTTACACGAATATTCTCATTATTTAGAGAATTTACGCCTTAAAAAAGACCACATTTTGGATGCCCAAACTGAGGCC
TTATTAAGTGGCGCTGCTGAGATTTTTGACGCTTCTAGCCAAACTTTTAGTGTCTTAAGTGATTCTGATTTAGAATTCCC
CTATGTAGAAGATGAAAATGGCGACACTGTTCAATTATCTAACGGCCTCTATGGTGCTTTAATTGAATCAACAGATCGAG
CCGTTCGCCAAGATGCTTTTGCTGCTTTATACAGTGTTTATGATCAATTCCAGAATACGCTAGCCCAAACTTTGACTGGT
AATGTTAAAAGTCATAACTTTATGGCAACTGCCCATCATTATCCAAATGCTCGTACTGCTGCAATGGCTGCTGATAATAT
CCCAGAAAGTGTCTATGATACTTTAGTTGAACAAGTCAACGCTCACTTACCGCTATTGCATCGTTATGTCGCACTACGCA
AACAACTATTAGGCGTTGCCGAGCTTCACATGTATGACATGTATGTGCCATTAACTGGTGAACCACCACTAAACTACACC
TATGACGAAGCTAAAGTTGAAGCACGTAAGGCGTTAGCTGTCCTTGGCGAAGATTATCTAAGCCATGTTGATGAAATCTT
CAATAACCGCTATATCGATGTGGTTGAAAGCAAAGGCAAAACAAGTGGCGCTTACTCTGGCGGTGCCTATGACACAGCCC
CTTATGAGTTATTGAACTGGCAAGATAGTGTTAATAGTCTTTATACGTTAGTTCATGAAACTGGTCATAGCGTCCATAGT
TGGTACACGCGGCATAACCAACCTTATCAATACGGCGACTATCCTATCTTCTTAGCCGAAATTGCCTCAACAACTAATGA
GAATCTGTTAACAGAATACTTGTTACAAACCCAGACAGATCCTCAAGTGCGAGCTTATTTACTCAACTACTATTTAGATG
GTTTTAAAGGCACGGTCTTCCGTCAAACACAGTTTGCTGAATTTGAACACTTTATTCACACTGCTGATGCAGCTGGCGAA
CCGCTCACCGCTGATGTCCTCGATGACTATTATGGCGATTTAAACGCACGTTATTATGGACCAGCTGTTGCTGAAGATCC
CGAGATTGCCTTAGAATGGTCTAGAATCCCACATTTCTACTACAATTATTATGTTTATCAATATGCAACTGGTTTTGCTG
CCGCTTCAACATTGTCACAATTGATGTTGACAAATGGCCAACCTGCCGTCAACCGTTACCTAGACTTCCTTAAGTCAGGT
AGTTCAGACTACGCGCTCAACACTATGAAAAAAGCTGGCCTTGATATGACTCAACCAGATTATTTAGAAGCGGCTTTTGC
CGTCTTCGAAAAGCGCCTTAACGAATTAGAAAGTTTAATTAAGAAGGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2BH87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.782

98.342

0.519

Multiple sequence alignment