Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   F8M43_RS14560 Genome accession   NZ_CP044498
Coordinates   2762395..2763141 (-) Length   248 a.a.
NCBI ID   WP_072692713.1    Uniprot ID   -
Organism   Bacillus subtilis strain ms-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2757395..2768141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS14535 mreC 2757804..2758676 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  F8M43_RS14540 mreB 2758707..2759720 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  F8M43_RS14545 radC 2759812..2760507 (-) 696 WP_015251546.1 DNA repair protein RadC -
  F8M43_RS14550 maf 2760544..2761113 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  F8M43_RS14555 spoIIB 2761266..2762261 (-) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  F8M43_RS14560 comC 2762395..2763141 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  F8M43_RS14565 folC 2763283..2764575 (-) 1293 WP_038427817.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  F8M43_RS14570 valS 2764635..2767277 (-) 2643 WP_029727115.1 valine--tRNA ligase -
  F8M43_RS14575 - 2767725..2767916 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=390579 F8M43_RS14560 WP_072692713.1 2762395..2763141(-) (comC) [Bacillus subtilis strain ms-2]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPATELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=390579 F8M43_RS14560 WP_072692713.1 2762395..2763141(-) (comC) [Bacillus subtilis strain ms-2]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAACAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment