Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMBM01240355_RS07705 Genome accession   NC_017517
Coordinates   1491405..1491929 (-) Length   174 a.a.
NCBI ID   WP_002212976.1    Uniprot ID   P66849
Organism   Neisseria meningitidis M01-240355     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1486405..1496929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS07685 (NMBM01240355_1387) recP/tkt 1486530..1488509 (+) 1980 WP_014582128.1 transketolase Machinery gene
  NMBM01240355_RS07690 (NMBM01240355_1388) fumC 1488657..1490045 (+) 1389 WP_002216904.1 class II fumarate hydratase -
  NMBM01240355_RS07695 (NMBM01240355_1389) - 1490110..1491033 (-) 924 WP_002238105.1 DMT family transporter -
  NMBM01240355_RS15345 - 1491205..1491345 (+) 141 WP_153312944.1 hypothetical protein -
  NMBM01240355_RS07705 (NMBM01240355_1390) ssb 1491405..1491929 (-) 525 WP_002212976.1 single-stranded DNA-binding protein Machinery gene
  NMBM01240355_RS07710 (NMBM01240355_1391) - 1491932..1493314 (-) 1383 WP_041423398.1 MFS transporter -
  NMBM01240355_RS07715 (NMBM01240355_1392) - 1493425..1494048 (-) 624 WP_002212974.1 lytic transglycosylase domain-containing protein -
  NMBM01240355_RS07725 (NMBM01240355_1393) - 1494555..1494746 (-) 192 Protein_1467 transposase -
  NMBM01240355_RS07730 (NMBM01240355_1394) - 1494783..1495274 (-) 492 WP_014582131.1 transposase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19452.65 Da        Isoelectric Point: 5.8354

>NTDB_id=39057 NMBM01240355_RS07705 WP_002212976.1 1491405..1491929(-) (ssb) [Neisseria meningitidis M01-240355]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=39057 NMBM01240355_RS07705 WP_002212976.1 1491405..1491929(-) (ssb) [Neisseria meningitidis M01-240355]
ATGTCATTGAACAAAGTTATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCGGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAACGTGTAGAGCGTACTGAGTGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAACGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGTGCGCCTTACGAGGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCAC
AGCAAAGCCGGCAGCCCGCCTCCGACGCGCCGTCCCATCCCCAAGAAGCACCAGCCGCGCCGCGCCGCCAACCCGTGCCT
GCCGCCGCCCCGGTCGAGGATATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66849

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

100

100

1
  ssb Neisseria gonorrhoeae MS11

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

43.956

100

0.46

Multiple sequence alignment