Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   NLA_RS02925 Genome accession   NC_014752
Coordinates   540212..543421 (+) Length   1069 a.a.
NCBI ID   WP_013448556.1    Uniprot ID   E4ZBR3
Organism   Neisseria lactamica 020-06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 535212..548421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS02900 (NLA_5470) ccoO 536215..536826 (+) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -
  NLA_RS02905 (NLA_5480) - 536831..537001 (+) 171 WP_003706994.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  NLA_RS02910 (NLA_5490) ccoP 537025..538356 (+) 1332 WP_013448554.1 cytochrome-c oxidase, cbb3-type subunit III -
  NLA_RS02920 (NLA_5510) - 538701..540110 (+) 1410 WP_013448555.1 PepSY-associated TM helix domain-containing protein -
  NLA_RS02925 (NLA_5520) recC 540212..543421 (+) 3210 WP_013448556.1 exodeoxyribonuclease V subunit gamma Machinery gene
  NLA_RS02930 (NLA_5530) - 543489..543953 (-) 465 WP_269446156.1 AbgT family transporter -
  NLA_RS02935 (NLA_5540) - 544318..544530 (+) 213 WP_042508319.1 hypothetical protein -
  NLA_RS02940 (NLA_5550) mtrR 544776..545408 (-) 633 WP_013448558.1 multidrug efflux system transcriptional repressor MtrR -
  NLA_RS02950 (NLA_5560) mtrC 545655..546893 (+) 1239 WP_013448559.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120690.25 Da        Isoelectric Point: 4.6352

>NTDB_id=39057 NLA_RS02925 WP_013448556.1 540212..543421(+) (recC) [Neisseria lactamica 020-06]
MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRCVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWCYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLSEMEIEGETPVFEEGGRDTLLHVLQTDIQNLKMPSETA
GSVNTDDGSIRIVSAHSPLRELQILKDKLLQILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYALECLSDLLESRFEVDKVLALLETAPVLCRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDRLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTDLFGRFAAFIETLSDIARIWRQPATVGEWVARCRDLLETLFQVEGDDQK
AVQSLENEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGANSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDNPVESCEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWHEPYIDPAWEPAEPFEPQHAEQIAEIYIEARREGQDFSQTAARIAAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPFPYAIPSDGQILKGSLSNLYQCGQVFYAYGKPNAPQRVAFLLEHLIFCAVMPSEAETRQTFIVQSGETEILAEIA
QDRALRLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFTQKQDWEAVLKKAQTAYYGSKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTLAAAEKKEEAGAA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=39057 NLA_RS02925 WP_013448556.1 540212..543421(+) (recC) [Neisseria lactamica 020-06]
ATGTTTTATTTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCACTGTTTGCCCGCATTCAGAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTATCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGTGCAGAGTTTCAAAACGG
AGCGGAATTTGAAGACGTAAGGTGTGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCGGATTATCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTCGTCTATCGTCCCCAGTGGATAGACGCGTGGCAGCAGGGCAGGATACTCGGT
TTGGGCGACGATGAAATCTGGCAGTCCAAACTGTGGTGTTACCTCGACGACGGCAGGCAAAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAGCTGTTGGAGTCTTTGAGCAGTGATAAGCTGCCAGAGCGTTATTTCGTGTTCGGCATTTCTACTATGG
CGCCGATGTATCTGCAACTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
TATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTGACTCAGGCGGGGCATCCGCT
GCTCGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAGCGAAATGGAAATAGAAGGGGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGTCCTTCAAACCGATATCCAAAACCTGAAAATGCCGTCTGAAACGGCG
GGAAGCGTCAACACGGACGACGGCTCGATACGCATTGTTTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGCAGATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATAGCCGTATTAACCCCGAACATCGAACCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCACAGCCCGGCGCGCAGGCATTGCCGTATTCTGTTTCGGACGTGAAA
ATCAGCCGCCGCCAACCGTTTTTTTATGCATTGGAATGCCTGTCCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTCGCGCTTTTGGAAACCGCCCCCGTGTTGTGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGATATGG
TTGCCGATTTGAACGTTCACTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCGGCTGTTTACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGACCTGTTCGGACGTTTTGCCGCCTTTATCGAGACCCTGTCGGATATTGCCCGGATATGGCGGCAGC
CCGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTCCAAGTCGAAGGCGATGACCAAAAG
GCAGTCCAAAGCCTCGAAAACGAATGGGTCAAATGGCAGGCGGAAACCGAATTGGCTCAATTTTCCGGACAGTTGCCGCC
GCACACCGTCATCCGCCACATCCGCCGCTTCCTCGACAGCGAAAGCGAAGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCTTTTAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCTGCCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
GTTCCTCGAAGCCCTCATCAGCGCGCGCGAGATCCTCTACCTGTCCTACATCGGGCGCGATATCCGCAAAGACGAAGAGC
TTGCCCCGTCTTCCCTGTTGGGCGAACTCATCGACACAGTTGCCGCCATGACCGGAGCAAACAGCCGCCAACTTGCACAA
AATTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGGCAAACGCCCGAACCGCCACAACCCTTTTTCGACAACCCCGTCGAAAGTT
GCGAACCTGTTGCTGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAACCCCGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGCACGAACCCTATATCGACCCGGCGTGGGAGCCGGCCGAACCCTTCGAGCCGCAACACGCGGAGCAAATCGC
CGAAATCTATATTGAGGCGCGCCGCGAAGGACAAGATTTTTCCCAAACCGCCGCCCGTATCGCGGCGGAAAGCCTGCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACCGCTGCCAAACAAATCGACACGGCGGTTTTAAATAGC
CCCAAACTGCCCCCGTTCCCATACGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGTTTGAGCAATTTATACCAATG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAATGCGCCGCAACGTGTGGCTTTTTTGTTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCGGCTGTTGTCGGAATGGATGGCATTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCGCCGCCGAAGCGTTTACCCAAAAACAAGATTGGGAAGCCGTCCTGAAAAAAGCCCAAACCGCCT
ATTACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGCCTGCTTGCCGACACGCTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGG
AGCAGCATAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-997)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4ZBR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

93.92

100

0.939

Multiple sequence alignment