Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   F8M43_RS12410 Genome accession   NZ_CP044498
Coordinates   2401093..2401896 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain ms-2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396093..2406896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS12385 glpQB 2397239..2397970 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  F8M43_RS12390 yqiI 2398049..2398669 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  F8M43_RS12395 yqiH 2398684..2398977 (-) 294 WP_003230284.1 lipoprotein -
  F8M43_RS12400 - 2399285..2399437 (+) 153 WP_014480226.1 hypothetical protein -
  F8M43_RS12405 yqiG 2399510..2400628 (+) 1119 WP_015714237.1 NADH-dependent flavin oxidoreductase -
  F8M43_RS12410 spo0A 2401093..2401896 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  F8M43_RS12415 spoIVB 2402172..2403452 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  F8M43_RS12420 recN 2403626..2405356 (-) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  F8M43_RS12425 argR 2405393..2405842 (-) 450 WP_003230265.1 arginine repressor ArgR -
  F8M43_RS12430 yqxC 2405940..2406785 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=390560 F8M43_RS12410 WP_003226427.1 2401093..2401896(-) (spo0A) [Bacillus subtilis strain ms-2]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=390560 F8M43_RS12410 WP_003226427.1 2401093..2401896(-) (spo0A) [Bacillus subtilis strain ms-2]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAAGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment