Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   F8M43_RS11420 Genome accession   NZ_CP044498
Coordinates   2224061..2224681 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain ms-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2219061..2229681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS11380 ptsA 2220189..2220695 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  F8M43_RS11385 ypqA 2220833..2221252 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  F8M43_RS11390 sppG 2221273..2221650 (-) 378 WP_015251832.1 YppG family protein -
  F8M43_RS11395 yppF 2221838..2222026 (+) 189 WP_003230690.1 YppF family protein -
  F8M43_RS11400 yppE 2222068..2222439 (-) 372 WP_029726786.1 YppE family protein -
  F8M43_RS11405 yppD 2222485..2222730 (-) 246 WP_015251831.1 YppD family protein -
  F8M43_RS11410 sspM 2222929..2223033 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  F8M43_RS11415 yppC 2223058..2224020 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  F8M43_RS11420 recU 2224061..2224681 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  F8M43_RS11425 ponA 2224703..2227447 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  F8M43_RS11430 ypoC 2227523..2228017 (-) 495 WP_029726783.1 YpoC family protein -
  F8M43_RS11435 nth 2228014..2228673 (-) 660 WP_029726782.1 endonuclease III -
  F8M43_RS11440 dnaD 2228692..2229390 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=390559 F8M43_RS11420 WP_004399067.1 2224061..2224681(+) (recU) [Bacillus subtilis strain ms-2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=390559 F8M43_RS11420 WP_004399067.1 2224061..2224681(+) (recU) [Bacillus subtilis strain ms-2]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment