Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   F8M43_RS07525 Genome accession   NZ_CP044498
Coordinates   1431017..1431481 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain ms-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1426017..1436481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS07505 kinA 1426484..1428304 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  F8M43_RS07510 dapX 1428314..1429495 (-) 1182 WP_014476653.1 aminotransferase A -
  F8M43_RS07515 - 1429697..1429858 (-) 162 WP_003245246.1 hypothetical protein -
  F8M43_RS07520 cheV 1430062..1430973 (+) 912 WP_029727006.1 chemotaxis protein CheV -
  F8M43_RS07525 kre 1431017..1431481 (-) 465 WP_003232406.1 YkyB family protein Regulator
  F8M43_RS07530 ykuC 1431607..1432899 (-) 1293 WP_029727007.1 MFS transporter -
  F8M43_RS07535 ltdD 1432975..1433469 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  F8M43_RS07540 ppeE 1433521..1434384 (-) 864 WP_029727008.1 metallophosphoesterase -
  F8M43_RS07545 fadH 1434527..1435291 (+) 765 WP_029727009.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=390552 F8M43_RS07525 WP_003232406.1 1431017..1431481(-) (kre) [Bacillus subtilis strain ms-2]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=390552 F8M43_RS07525 WP_003232406.1 1431017..1431481(-) (kre) [Bacillus subtilis strain ms-2]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment