Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   F8M43_RS05550 Genome accession   NZ_CP044498
Coordinates   1069929..1070507 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain ms-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064929..1075507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS05530 hemAT 1065440..1066738 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  F8M43_RS05535 comW 1066877..1068406 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  F8M43_RS05540 yhxC 1068518..1069375 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  F8M43_RS05545 yhzC 1069403..1069636 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  F8M43_RS05550 comK 1069929..1070507 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  F8M43_RS05555 yhxD 1070554..1071453 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  F8M43_RS05560 yhjA 1071670..1071939 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  F8M43_RS05565 yhjB 1071983..1073452 (-) 1470 WP_029726292.1 sodium:solute symporter -
  F8M43_RS05570 yhjC 1073449..1073649 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  F8M43_RS05575 - 1073857..1074219 (-) 363 WP_003233132.1 hypothetical protein -
  F8M43_RS05580 yhjE 1074371..1074994 (+) 624 WP_010886465.1 VTT domain-containing protein -
  F8M43_RS05585 lepB 1074996..1075502 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=390540 F8M43_RS05550 WP_029317573.1 1069929..1070507(+) (comK) [Bacillus subtilis strain ms-2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=390540 F8M43_RS05550 WP_029317573.1 1069929..1070507(+) (comK) [Bacillus subtilis strain ms-2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment