Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   F8M43_RS00245 Genome accession   NZ_CP044498
Coordinates   44361..44651 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain ms-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39361..49651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS00205 darA 39384..39713 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  F8M43_RS00210 yaaR 39726..40166 (+) 441 WP_009966249.1 YaaR family protein -
  F8M43_RS00215 holB 40178..41167 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  F8M43_RS00220 ricT 41170..41997 (+) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  F8M43_RS00225 yabA 42012..42371 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  F8M43_RS00230 trmNF 42430..43173 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  F8M43_RS00235 yazA 43160..43459 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  F8M43_RS00240 rsmI 43434..44312 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  F8M43_RS00245 abrB 44361..44651 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  F8M43_RS00250 metG 45146..47140 (+) 1995 WP_029726394.1 methionine--tRNA ligase -
  F8M43_RS00255 dayD 47220..47987 (+) 768 WP_029726393.1 TatD family hydrolase -
  F8M43_RS00260 yabE 48143..49456 (+) 1314 WP_029726392.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=390525 F8M43_RS00245 WP_003226760.1 44361..44651(-) (abrB) [Bacillus subtilis strain ms-2]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=390525 F8M43_RS00245 WP_003226760.1 44361..44651(-) (abrB) [Bacillus subtilis strain ms-2]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment