Detailed information NTG0390500

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HJ589_RS04710
• Genome accession: NZ_CP053211
• Coordinates: 976433..977425 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain QDFD216
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 971433..982425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HJ589_RS04680 (HJ589_04695)	ispD	971494..972204 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HJ589_RS04685 (HJ589_04700)	ispF	972204..972683 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HJ589_RS04690 (HJ589_04705)	truD	972680..973729 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
HJ589_RS04695 (HJ589_04710)	surE	973710..974471 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HJ589_RS04700 (HJ589_04715)	pcm	974465..975091 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HJ589_RS04705 (HJ589_04720)	nlpD	975276..976370 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HJ589_RS04710 (HJ589_04725)	rpoS	976433..977425 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HJ589_RS04715 (HJ589_04730)	ygbN	977519..978883 (-)	1365	WP_000104441.1	GntP family transporter	-
HJ589_RS04720 (HJ589_04735)	ygbM	978972..979748 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
HJ589_RS04725 (HJ589_04740)	ygbL	979753..980391 (-)	639	WP_001278994.1	aldolase	-
HJ589_RS04730 (HJ589_04745)	otnK	980388..981650 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=390500 HJ589_RS04710 WP_000081550.1 976433..977425(+) (rpoS) [Escherichia coli strain QDFD216]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=390500 HJ589_RS04710 WP_000081550.1 976433..977425(+) (rpoS) [Escherichia coli strain QDFD216]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715