Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F8B64_RS02190 Genome accession   NZ_CP044497
Coordinates   435370..436023 (-) Length   217 a.a.
NCBI ID   WP_005694574.1    Uniprot ID   -
Organism   Haemophilus influenzae strain PittGG     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 430370..441023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8B64_RS02190 (F8B64_02190) sxy/tfoX 435370..436023 (-) 654 WP_005694574.1 DNA transformation protein TfoX Regulator
  F8B64_RS02195 (F8B64_02195) recA 436395..437459 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  F8B64_RS02200 (F8B64_02200) recX 437539..437997 (+) 459 WP_012055119.1 recombination regulator RecX -
  F8B64_RS02205 (F8B64_02205) crcB 437994..438380 (-) 387 WP_005658943.1 fluoride efflux transporter CrcB -
  F8B64_RS02210 (F8B64_02210) - 438380..439198 (-) 819 WP_005651073.1 Cof-type HAD-IIB family hydrolase -
  F8B64_RS02215 (F8B64_02215) - 439602..440606 (+) 1005 WP_012055120.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25001.38 Da        Isoelectric Point: 10.0171

>NTDB_id=390498 F8B64_RS02190 WP_005694574.1 435370..436023(-) (sxy/tfoX) [Haemophilus influenzae strain PittGG]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=390498 F8B64_RS02190 WP_005694574.1 435370..436023(-) (sxy/tfoX) [Haemophilus influenzae strain PittGG]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGTTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.539

100

0.995

Multiple sequence alignment