Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   F8B64_RS01900 Genome accession   NZ_CP044497
Coordinates   385005..385301 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain PittGG     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 380005..390301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8B64_RS01890 (F8B64_01890) - 381336..384383 (+) 3048 WP_012055158.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  F8B64_RS01895 (F8B64_01895) - 384653..385012 (+) 360 WP_005694481.1 type II toxin-antitoxin system RelE/ParE family toxin -
  F8B64_RS01900 (F8B64_01900) HI0659 385005..385301 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  F8B64_RS01905 (F8B64_01905) - 385462..387378 (+) 1917 WP_012055157.1 ABC transporter ATP-binding protein -
  F8B64_RS01910 (F8B64_01910) - 387388..387924 (+) 537 WP_012055156.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  F8B64_RS01915 (F8B64_01915) - 387940..388491 (+) 552 WP_012055155.1 Sua5/YciO/YrdC/YwlC family protein -
  F8B64_RS01920 (F8B64_01920) aroE 388495..389301 (+) 807 WP_012055154.1 shikimate dehydrogenase -
  F8B64_RS01925 (F8B64_01925) - 389313..390071 (+) 759 WP_012055153.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=390497 F8B64_RS01900 WP_005650837.1 385005..385301(+) (HI0659) [Haemophilus influenzae strain PittGG]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=390497 F8B64_RS01900 WP_005650837.1 385005..385301(+) (HI0659) [Haemophilus influenzae strain PittGG]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTA
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment