Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LA749_RS07315 Genome accession   NZ_CP044496
Coordinates   1488770..1490566 (+) Length   598 a.a.
NCBI ID   WP_056970748.1    Uniprot ID   A0A5P5ZK44
Organism   Lactobacillus acetotolerans strain LA749     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1490883..1492160 1488770..1490566 flank 317


Gene organization within MGE regions


Location: 1488770..1492160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA749_RS07315 (LA749_07315) pepF 1488770..1490566 (+) 1797 WP_056970748.1 oligoendopeptidase F Regulator
  LA749_RS07320 (LA749_07320) - 1490883..1492160 (+) 1278 WP_151443666.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68442.60 Da        Isoelectric Point: 5.4009

>NTDB_id=390487 LA749_RS07315 WP_056970748.1 1488770..1490566(+) (pepF) [Lactobacillus acetotolerans strain LA749]
MAIPKRAEVPENLRWDLTRVFKSDQDWKDEYNKVKSAVQRLSNLKRNFTKSGKDLYDALTKILAVARHLEKVYTYASMAS
DVDTSDAHYLGYVSQVQSLASQFETNTSFINPGVLSISDEKLQQFKKDEPRLKNYDHWLEQITKKRPHTLPANEEKLIAG
AGDAMGVSENTFNVLTNSDMEYGYVQTDDGQMVQLTDGLYSQLIQSQNRNVRKGAFDVMYATYGQFENTLASTLSGVVKE
HNYNARVHNYDSARSAALAENGIPTVVYDTLIKEVNDHIDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPALSYTFEEA
KKEAKKALTPLGDDYLKHVDYIFNNRDIDVVESQNKVTGAYSGGCYDTDPYELLNWEDNIDSLYTLVHETGHSVHSLYTR
ENQPYVYGDYPIFVAEIASTTNENILTEYFLDHIKDPKTKAFILNYYLDSFKGTLYRQTQFAEFEQFIHEADAKGEPLTV
DKLNQFYGNLNQHYYGDAVEPGGNIAKEWARIPHFYYDFYVYQYATGFAAASALANKVVHGTDKQRKAYIGFLKAGSSDY
PTEIMKRAGVDMTKPDYLEDAFNTFAKRLDEFENLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=390487 LA749_RS07315 WP_056970748.1 1488770..1490566(+) (pepF) [Lactobacillus acetotolerans strain LA749]
ATGGCAATTCCAAAAAGGGCAGAAGTTCCAGAAAATTTGAGATGGGACCTTACCCGCGTCTTCAAGTCCGACCAAGATTG
GAAAGATGAATATAACAAAGTAAAAAGCGCAGTGCAAAGGTTAAGCAACTTAAAAAGAAACTTTACTAAATCCGGGAAAG
ATCTTTACGATGCTTTAACCAAAATATTGGCTGTGGCCCGTCATTTAGAAAAAGTTTACACATATGCCAGCATGGCTAGC
GACGTAGATACATCTGATGCGCATTATTTAGGCTATGTCAGCCAGGTACAAAGCTTGGCCAGCCAATTTGAAACGAACAC
TTCCTTTATTAATCCGGGAGTTTTGAGTATTTCTGATGAAAAACTTCAGCAATTTAAAAAAGATGAACCAAGATTAAAGA
ATTACGACCACTGGCTTGAACAAATCACTAAGAAACGTCCGCATACCTTGCCCGCTAATGAAGAAAAATTAATAGCAGGA
GCTGGAGACGCGATGGGTGTGTCCGAAAACACCTTTAACGTCTTAACCAACTCTGATATGGAATATGGCTACGTTCAAAC
TGATGATGGACAAATGGTACAGCTAACCGACGGACTATATTCGCAACTCATCCAGTCTCAAAATCGTAATGTCCGTAAGG
GTGCTTTCGATGTCATGTATGCAACTTACGGTCAATTTGAAAACACCCTGGCCTCAACTCTTTCTGGGGTTGTAAAAGAG
CACAATTATAATGCACGCGTACACAACTATGATTCTGCCCGCAGTGCCGCCCTCGCAGAAAATGGTATCCCAACAGTAGT
TTATGACACCTTAATCAAGGAAGTTAATGATCATATAGACCTGCTGCACAGGTACGTTGCCCTTCGTAAAAAGATCTTGG
GATTAAAGGATTTGCAAATGTGGGACATGTACGTTCCGTTAACTGGAAAGCCCGCACTTTCTTATACCTTCGAAGAAGCC
AAAAAAGAGGCTAAGAAAGCTTTAACTCCACTTGGCGATGATTACCTTAAGCACGTTGACTACATCTTTAATAACCGTGA
TATTGACGTTGTCGAGTCACAAAATAAAGTTACCGGCGCATATTCCGGTGGCTGCTACGATACTGACCCGTACGAACTAC
TTAATTGGGAAGACAATATCGATTCACTCTATACTTTAGTCCACGAAACAGGCCACTCCGTTCACAGCTTATACACGCGG
GAGAATCAGCCTTACGTTTACGGTGACTATCCTATCTTTGTGGCCGAAATTGCTTCAACTACTAATGAAAATATTTTGAC
GGAATACTTTTTAGACCATATTAAAGATCCTAAAACCAAAGCCTTCATTTTGAACTATTACCTTGATTCCTTTAAGGGTA
CCTTATACAGGCAGACACAGTTTGCGGAATTTGAGCAGTTTATTCATGAAGCTGACGCCAAGGGTGAACCATTAACGGTA
GACAAATTAAACCAGTTCTATGGCAATCTGAACCAACATTATTATGGGGATGCGGTTGAGCCTGGTGGCAACATTGCTAA
GGAATGGGCAAGAATTCCCCACTTCTACTATGACTTTTACGTCTACCAATACGCTACCGGATTTGCGGCTGCCAGTGCAC
TTGCTAATAAGGTTGTTCACGGAACAGATAAACAGAGAAAAGCTTATATCGGCTTCCTAAAAGCAGGATCTAGCGACTAC
CCAACTGAAATCATGAAGAGGGCTGGGGTTGATATGACTAAACCTGACTACTTAGAAGATGCATTCAATACTTTTGCAAA
ACGTCTAGACGAATTTGAAAATTTAATTGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(115-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P5ZK44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.927

99.164

0.505

Multiple sequence alignment