Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FSA28_RS09705 Genome accession   NZ_CP044495
Coordinates   1920177..1920890 (+) Length   237 a.a.
NCBI ID   WP_002266885.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915177..1925890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS10585 - 1915958..1916296 (-) 339 Protein_1802 lipase -
  FSA28_RS09695 (FSA28_1699) treC 1916382..1918010 (-) 1629 WP_002291552.1 alpha,alpha-phosphotrehalase -
  FSA28_RS09700 (FSA28_1700) treP 1918036..1920003 (-) 1968 WP_002265239.1 PTS system trehalose-specific EIIBC component -
  FSA28_RS09705 (FSA28_1701) treR 1920177..1920890 (+) 714 WP_002266885.1 trehalose operon repressor Regulator
  FSA28_RS09710 (FSA28_1703) dexA 1921236..1923788 (-) 2553 WP_088741868.1 dextranase DexA -
  FSA28_RS09715 (FSA28_1704) dtd 1924273..1924719 (-) 447 WP_002266260.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27807.17 Da        Isoelectric Point: 9.7425

>NTDB_id=390467 FSA28_RS09705 WP_002266885.1 1920177..1920890(+) (treR) [Streptococcus mutans strain UA140]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=390467 FSA28_RS09705 WP_002266885.1 1920177..1920890(+) (treR) [Streptococcus mutans strain UA140]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGTCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTCATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGACATCGTGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-65)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.156

100

0.992

Multiple sequence alignment