Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FSA28_RS01635 Genome accession   NZ_CP044495
Coordinates   332424..333824 (+) Length   466 a.a.
NCBI ID   WP_002288043.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327424..338824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS01605 (FSA28_0105) - 328062..328598 (+) 537 WP_002277594.1 5-formyltetrahydrofolate cyclo-ligase -
  FSA28_RS01610 (FSA28_0106) - 328585..329256 (+) 672 WP_002265013.1 rhomboid family intramembrane serine protease -
  FSA28_RS01615 (FSA28_0107) galU 329278..330198 (-) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FSA28_RS01620 (FSA28_0108) - 330200..331219 (-) 1020 WP_002269244.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FSA28_RS01625 (FSA28_0109) - 331543..331986 (+) 444 WP_002291220.1 dUTP diphosphatase -
  FSA28_RS01630 (FSA28_0110) - 331996..332466 (+) 471 WP_002291222.1 isochorismatase family cysteine hydrolase -
  FSA28_RS01635 (FSA28_0111) radA 332424..333824 (+) 1401 WP_002288043.1 DNA repair protein RadA Machinery gene
  FSA28_RS01640 (FSA28_0112) - 333914..334408 (+) 495 WP_002262519.1 carbonic anhydrase -
  FSA28_RS01645 (FSA28_0113) - 334597..335310 (+) 714 WP_002262518.1 TIGR00266 family protein -
  FSA28_RS01650 (FSA28_0114) gltX 335704..337161 (+) 1458 WP_002291227.1 glutamate--tRNA ligase -
  FSA28_RS01655 (FSA28_0115) - 337277..337801 (+) 525 WP_002265005.1 transcription repressor NadR -
  FSA28_RS01660 (FSA28_0116) - 337868..338416 (+) 549 WP_002262515.1 hypothetical protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51149.70 Da        Isoelectric Point: 7.1359

>NTDB_id=390420 FSA28_RS01635 WP_002288043.1 332424..333824(+) (radA) [Streptococcus mutans strain UA140]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYISGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=390420 FSA28_RS01635 WP_002288043.1 332424..333824(+) (radA) [Streptococcus mutans strain UA140]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATA
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAATATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGGCCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.938

96.996

0.863
  radA Streptococcus pneumoniae D39

88.938

96.996

0.863
  radA Streptococcus pneumoniae R6

88.938

96.996

0.863
  radA Streptococcus pneumoniae TIGR4

88.938

96.996

0.863
  radA Streptococcus mitis SK321

88.938

96.996

0.863
  radA Streptococcus mitis NCTC 12261

88.717

96.996

0.861
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

97.21

0.605

Multiple sequence alignment