Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FSA40_RS09600 Genome accession   NZ_CP044493
Coordinates   1890902..1891615 (+) Length   237 a.a.
NCBI ID   WP_002262353.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1885902..1896615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS10505 - 1886683..1887021 (-) 339 Protein_1791 lipase -
  FSA40_RS09590 (FSA40_1925) treC 1887107..1888735 (-) 1629 WP_151416447.1 alpha,alpha-phosphotrehalase -
  FSA40_RS09595 (FSA40_1926) treP 1888761..1890728 (-) 1968 WP_002265239.1 PTS system trehalose-specific EIIBC component -
  FSA40_RS09600 (FSA40_1927) treR 1890902..1891615 (+) 714 WP_002262353.1 trehalose operon repressor Regulator
  FSA40_RS09605 (FSA40_1929) dexA 1891961..1894513 (-) 2553 WP_151416484.1 dextranase DexA -
  FSA40_RS09610 (FSA40_1930) dtd 1894998..1895444 (-) 447 WP_002269409.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27795.12 Da        Isoelectric Point: 9.7425

>NTDB_id=390407 FSA40_RS09600 WP_002262353.1 1890902..1891615(+) (treR) [Streptococcus mutans strain MD]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQTYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=390407 FSA40_RS09600 WP_002262353.1 1890902..1891615(+) (treR) [Streptococcus mutans strain MD]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGACCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATTACAAGACAGCGCGTCATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.578

100

0.996

Multiple sequence alignment