Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   FSA40_RS03100 Genome accession   NZ_CP044493
Coordinates   591828..593627 (+) Length   599 a.a.
NCBI ID   WP_151416211.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 586828..598627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS03075 (FSA40_0607) - 588067..589035 (+) 969 WP_151416209.1 zinc-binding dehydrogenase -
  FSA40_RS03080 - 589068..589195 (-) 128 Protein_549 transcriptional regulator -
  FSA40_RS03085 (FSA40_0608) - 589280..589561 (+) 282 WP_002269717.1 hypothetical protein -
  FSA40_RS03090 (FSA40_0609) - 589667..590560 (+) 894 WP_002261898.1 alpha/beta hydrolase -
  FSA40_RS03095 (FSA40_0610) - 590868..591806 (+) 939 WP_151416210.1 competence protein CoiA family protein -
  FSA40_RS03100 (FSA40_0611) pepF 591828..593627 (+) 1800 WP_151416211.1 oligoendopeptidase F Regulator
  FSA40_RS03105 (FSA40_0612) - 593844..594461 (+) 618 WP_002294974.1 HAD-IA family hydrolase -
  FSA40_RS03110 (FSA40_0613) - 594511..595218 (+) 708 WP_002272060.1 O-methyltransferase -
  FSA40_RS03115 (FSA40_0614) prsA 595280..596281 (+) 1002 WP_002261893.1 peptidylprolyl isomerase PrsA -
  FSA40_RS03120 (FSA40_0615) - 596493..597020 (+) 528 WP_301337316.1 LURP-one-related family protein -

Sequence


Protein


Download         Length: 599 a.a.        Molecular weight: 69822.46 Da        Isoelectric Point: 4.7752

>NTDB_id=390361 FSA40_RS03100 WP_151416211.1 591828..593627(+) (pepF) [Streptococcus mutans strain MD]
MSDNRSHIEEKYQWDLTSIFPNDQTWEKEEKSLAKDLEIAVKRAGHLLDSSQSLLEITELYLALSRRLEKLYVYASMKND
QDTTVSYYQELQAKATALIAKFNQTFAFYEPEFMLLSTEKYQDFLADCPDLLPYQHFFEKLFKQKKHVLSQKEEALLAEA
SEIFGAAGETFEILDNADIIFPWVKDETGEEVELSHGNFISLMESKNRKVRQEAYKAMYSIYEQYQHTYAKTLQTNVKVN
NFQAKIRNYKSAREAALAANFIPETVYDTLVEAVHNHLPLLQRYVKLRQNVLGLDDLKMYDIYVPLSEMDMTFTYEAALD
KAEEVLAIFGRDYAERVHRAFRERWIDVRVNKGKRSGAYSGGSYDTNAFILLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTEMLLKEVNDEKQRFAILNHYLDGFKGTVFRQTQFAEFEDLIYRADQAGDVLTSDY
LNNLYADLNEKYYGLSKKNNPEIQYEWARIPHFYYNFYVYQYATGFAAASFLAHKIVHGNQEDKDKYLNYLKAGNSDYPL
NVIAKAGLDMTESTYIDQAFKVFEERLIELEELVEKGID

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=390361 FSA40_RS03100 WP_151416211.1 591828..593627(+) (pepF) [Streptococcus mutans strain MD]
ATGTCTGATAATCGCAGTCATATTGAAGAAAAATACCAATGGGATTTGACCAGCATTTTTCCAAACGATCAAACTTGGGA
AAAAGAGGAGAAATCTTTAGCTAAGGATTTGGAAATAGCCGTTAAAAGAGCGGGTCATCTGCTTGACTCCAGTCAAAGTC
TGTTGGAGATCACAGAACTTTATCTGGCTTTGAGCCGTCGTTTGGAAAAACTTTATGTTTATGCTTCTATGAAGAATGAC
CAAGACACCACGGTCAGTTACTATCAAGAATTACAAGCTAAGGCAACAGCCTTGATCGCTAAATTTAATCAGACTTTTGC
CTTCTATGAGCCTGAATTTATGCTGTTATCAACAGAAAAATATCAGGATTTTTTGGCAGATTGTCCGGATTTATTGCCTT
ATCAACATTTTTTTGAAAAATTATTTAAACAAAAAAAGCATGTTCTTTCTCAAAAGGAAGAGGCACTTTTGGCTGAAGCC
AGTGAAATTTTTGGTGCTGCTGGTGAAACCTTTGAAATTCTTGACAATGCCGATATTATCTTTCCTTGGGTAAAAGACGA
GACAGGAGAAGAAGTTGAACTATCTCATGGTAATTTCATCAGTTTGATGGAATCCAAAAACCGCAAAGTTCGACAAGAAG
CTTATAAGGCCATGTACAGCATTTATGAGCAGTATCAACACACCTATGCTAAAACGCTGCAAACCAATGTTAAAGTTAAT
AATTTTCAAGCGAAAATCAGAAACTATAAGAGTGCGCGTGAAGCTGCTCTGGCAGCTAATTTTATTCCCGAAACTGTTTA
TGACACTTTAGTAGAAGCGGTCCATAATCACTTACCTTTGTTACAGCGTTATGTGAAGCTAAGGCAAAACGTTTTAGGCC
TTGATGATCTTAAGATGTATGATATTTACGTACCACTCTCAGAAATGGATATGACTTTTACTTATGAAGCAGCCTTGGAC
AAAGCAGAAGAAGTGTTAGCTATTTTTGGGCGAGACTATGCTGAGCGTGTGCATCGTGCATTTAGGGAGCGTTGGATTGA
TGTACGAGTCAATAAAGGCAAGCGTTCAGGCGCTTATTCAGGTGGTTCCTATGACACCAATGCTTTTATATTGCTTAACT
GGCAGGATACTTTGGATAATCTCTTCACTCTTGTTCATGAAACAGGACATTCTCTGCATTCTACTTTTACACGTGAAAAT
CAACCTTATGTTTACGGTGATTATTCTATTTTCTTGGCAGAAATTGCTTCGACAACCAATGAAAATATTTTAACTGAAAT
GCTTCTCAAAGAGGTAAATGATGAAAAGCAACGTTTTGCGATTTTGAATCATTATCTTGATGGTTTCAAAGGAACGGTTT
TCCGCCAAACACAATTTGCAGAATTTGAAGACTTGATTTATAGGGCTGATCAAGCAGGTGACGTTTTGACCAGTGATTAT
TTGAATAATCTCTATGCAGATCTCAATGAAAAATACTATGGTTTAAGCAAGAAAAATAATCCGGAAATTCAGTATGAATG
GGCTAGGATTCCGCATTTCTATTACAATTTTTATGTTTATCAGTACGCCACAGGCTTTGCTGCAGCTAGTTTTTTGGCTC
ACAAAATTGTTCATGGCAATCAAGAAGATAAGGACAAATATCTCAATTATCTCAAAGCTGGCAATTCAGACTATCCTCTC
AATGTTATTGCTAAAGCAGGTCTTGATATGACTGAGTCGACCTATATTGACCAAGCCTTCAAAGTCTTTGAAGAACGGTT
AATAGAGTTGGAAGAGTTGGTCGAAAAAGGAATTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.231

99.833

0.691


Multiple sequence alignment